Yet Another TAxonomy Handler
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Documentation for package ‘yatah’ version 1.0.0
Help Pages
| abundances | Abundance table for 199 samples. |
| all_ranks | Ranks handled by 'yatah' |
| get_all_clades | Extract all clades present in the lineages |
| get_clade | Extract the clade of a desired rank in a lineage |
| get_last_clade | Extract the last clade of a lineage |
| get_last_rank | Extract the last rank of a lineage |
| is_at_least_rank | Test if a lineage goes down to a specified rank |
| is_clade | Test if a lineage belongs to a clade |
| is_lineage | Test if a string is a lineage |
| is_rank | Test if a lineage goes down to a specified rank |
| taxtable | Taxonomic table |
| taxtree | Taxonomic tree |
| trim_common | Trim lineages until the shallowest common rank. |
| trim_rank | Trim lineages until a specified rank |
| trim_void | Trim void ranks in lineages |