Last updated on 2024-05-03 11:53:25 CEST.
| Package | ERROR | OK |
|---|---|---|
| hapsim | 11 | |
| sim1000G | 1 | 10 |
Current CRAN status: OK: 11
Current CRAN status: ERROR: 1, OK: 10
Version: 1.40
Check: examples
Result: ERROR
Running examples in 'sim1000G-Ex.R' failed
The error most likely occurred in:
> ### Name: downloadGeneticMap
> ### Title: Downloads a genetic map for a particular chromosome under GRCh37
> ### coordinates for use with sim1000G.
> ### Aliases: downloadGeneticMap
>
> ### ** Examples
>
>
>
>
> downloadGeneticMap(22, dir=tempdir() )
-> Downloading genetic map from: https://github.com/adimitromanolakis/geneticMap-GRCh37/raw/master/genetic_map_GRCh37_chr22.txt.gz
-> Saving genetic map to: D:\temp\Rtmpa0RBFT/genetic_map_GRCh37_chr22.txt.gz
Warning in download.file(url, destfile = dest_path, quiet = TRUE) :
URL 'https://raw.githubusercontent.com/adimitromanolakis/geneticMap-GRCh37/master/genetic_map_GRCh37_chr22.txt.gz': status was 'SSL connect error'
Error in download.file(url, destfile = dest_path, quiet = TRUE) :
cannot open URL 'https://github.com/adimitromanolakis/geneticMap-GRCh37/raw/master/genetic_map_GRCh37_chr22.txt.gz'
Calls: downloadGeneticMap -> download.file
Execution halted
Flavor: r-release-windows-x86_64
Version: 1.40
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building 'ExtractingRegionsForSimulation.Rmd' using rmarkdown
--- finished re-building 'ExtractingRegionsForSimulation.Rmd'
--- re-building 'SimulatingFamilyData.Rmd' using rmarkdown
Quitting from lines at lines 68-81 [unnamed-chunk-3] (SimulatingFamilyData.Rmd)
Error: processing vignette 'SimulatingFamilyData.Rmd' failed with diagnostics:
cannot open URL 'https://github.com/adimitromanolakis/geneticMap-GRCh37/raw/master/genetic_map_GRCh37_chr4.txt.gz'
--- failed re-building 'SimulatingFamilyData.Rmd'
SUMMARY: processing the following file failed:
'SimulatingFamilyData.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-windows-x86_64