Last updated on 2024-05-03 11:53:28 CEST.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| easyDifferentialGeneCoexpression | 1 | 11 | |
| geneExpressionFromGEO | 2 | 2 | 8 |
Current CRAN status: ERROR: 1, OK: 11
Version: 1.4
Check: package dependencies
Result: ERROR
Package required but not available: ‘diffcoexp’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavor: r-release-macos-arm64
Current CRAN status: ERROR: 2, NOTE: 2, OK: 8
Version: 0.9
Check: dependencies in R code
Result: NOTE
Namespaces in Imports field not imported from:
‘BiocManager’ ‘R.utils’ ‘markdown’
All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 0.9
Check: examples
Result: ERROR
Running examples in ‘geneExpressionFromGEO-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: getGeneExpressionFromGEO
> ### Title: Function that reads in the GEO code of a dataset, and returns
> ### the gene expression dataframe.
> ### Aliases: getGeneExpressionFromGEO
>
> ### ** Examples
>
> geneExpressionDF1 <- getGeneExpressionFromGEO("GSE3268", FALSE, FALSE)
Error in open.connection(x, "rb") :
Timeout was reached: [ftp.ncbi.nlm.nih.gov] SSL connection timeout
Calls: getGeneExpressionFromGEO -> <Anonymous> -> read_html.default
Execution halted
Flavor: r-patched-linux-x86_64
Version: 0.9
Check: package dependencies
Result: ERROR
Package required but not available: ‘GEOquery’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavor: r-oldrel-macos-arm64