CRAN Package Check Results for Maintainer Kevin R. Coombes <krc at silicovore.com>

CRAN Package Check Results for Maintainer ‘Kevin R. Coombes <krc at silicovore.com>’

Last updated on 2024-05-03 11:53:35 CEST.

Package	NOTE	OK
BimodalIndex		11
ClassComparison		12
ClassDiscovery	1	11
CloneSeeker		11
CrossValidate		12
GenAlgo	2	10
integIRTy		11
Mercator	1	11
Modeler		12
NameNeedle		11
NewmanOmics	1	11
oompaBase		11
oompaData		12
PCDimension		12
plasma	1	11
Polychrome		11
PreProcess		11
RCytoGPS		11
SIBERG	1	10
SillyPutty		12
TailRank		12
Thresher	1	11
Umpire		11
WayFindR		12

Version: 3.4.0
Check: Rd files
Result: NOTE checkRd: (-1) cd01-0-distanceMatrix.Rd:37-39: Lost braces in \itemize; meant \describe ? checkRd: (-1) cd01-0-distanceMatrix.Rd:40-43: Lost braces in \itemize; meant \describe ? checkRd: (-1) cd01-0-distanceMatrix.Rd:44-46: Lost braces in \itemize; meant \describe ? checkRd: (-1) cd01-0-distanceMatrix.Rd:47-48: Lost braces in \itemize; meant \describe ? checkRd: (-1) cd01-0-distanceMatrix.Rd:49-50: Lost braces in \itemize; meant \describe ? checkRd: (-1) cd01-0-distanceMatrix.Rd:51-52: Lost braces in \itemize; meant \describe ? checkRd: (-1) cd02-1-cluster3.Rd:25: Lost braces 25 | Kevin R. Coombes email{krc@silicovore.com} | ^ checkRd: (-1) cd03-0-ClusterTest-class.Rd:70: Lost braces 70 | Kevin R. Coombes email{krc@silicovore.com} | ^ Flavor: r-release-linux-x86_64

Package CloneSeeker

Current CRAN status: OK: 11

Package CrossValidate

Current CRAN status: OK: 12

Package GenAlgo

Current CRAN status: NOTE: 2, OK: 10

Version: 2.2.0
Check: data for non-ASCII characters
Result: NOTE Note: found 17 marked UTF-8 strings Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Package integIRTy

Current CRAN status: OK: 11

Package Mercator

Current CRAN status: NOTE: 1, OK: 11

Version: 1.1.2
Check: Rd files
Result: NOTE checkRd: (-1) Mercator-class.Rd:91-92: Lost braces 91 | \item{barplot{height, main = '', sub = NULL, border = NA, space = | ^ checkRd: (-1) Mercator-class.Rd:109-112: Lost braces 109 | \item{hist:}{\code{signature(object = "Mercator")}}{ | ^ checkRd: (-1) Mercator-class.Rd:113-116: Lost braces 113 | \item{summary:}{\code{signature(object = "Mercator")}}{ | ^ checkRd: (-1) Mercator-class.Rd:117-119: Lost braces 117 | \item{dim:}{\code{signature(object = "Mercator")}}{ | ^ checkRd: (-1) Mercator-class.Rd:120-122: Lost braces 120 | \item{[:}{\code{signature(object = "Mercator")}}{ | ^ checkRd: (-1) threshLGF.Rd:21: Lost braces; missing escapes or markup? 21 | \item{object}{An object of class {BinaryMatrix} | ^ Flavor: r-release-linux-x86_64

Package Modeler

Current CRAN status: OK: 12

Package NameNeedle

Current CRAN status: OK: 11

Package NewmanOmics

Current CRAN status: NOTE: 1, OK: 11

Version: 1.0.10
Check: Rd files
Result: NOTE checkRd: (-1) 03-MixOf3Beta-class.Rd:35: Lost braces; missing escapes or markup? 35 | parameters \code{L} and {M} (in that order).} | ^ Flavor: r-release-linux-x86_64

Package oompaBase

Current CRAN status: OK: 11

Package oompaData

Current CRAN status: OK: 12

Package PCDimension

Current CRAN status: OK: 12

Package plasma

Current CRAN status: NOTE: 1, OK: 11

Version: 1.0.0
Check: Rd files
Result: NOTE checkRd: (-1) 01-TCGA-ESCA-data.Rd:47: Lost braces in \enumerate; meant \describe ? checkRd: (-1) 01-TCGA-ESCA-data.Rd:48: Lost braces in \enumerate; meant \describe ? checkRd: (-1) 01-TCGA-ESCA-data.Rd:49-51: Lost braces in \enumerate; meant \describe ? checkRd: (-1) 01-TCGA-ESCA-data.Rd:52-55: Lost braces in \enumerate; meant \describe ? checkRd: (-1) 01-TCGA-ESCA-data.Rd:56-58: Lost braces in \enumerate; meant \describe ? checkRd: (-1) 01-TCGA-ESCA-data.Rd:59-62: Lost braces in \enumerate; meant \describe ? checkRd: (-1) 01-TCGA-ESCA-data.Rd:63-64: Lost braces in \enumerate; meant \describe ? checkRd: (-1) 02-fitCoxModel.Rd:87: Lost braces; missing escapes or markup? 87 | returns the value on which it was invoked. The {summary} method | ^ Flavor: r-release-linux-x86_64

Package Polychrome

Current CRAN status: OK: 11

Package PreProcess

Current CRAN status: OK: 11

Package RCytoGPS

Current CRAN status: OK: 11

Package SIBERG

Current CRAN status: NOTE: 1, OK: 10

Version: 2.0.3
Check: package dependencies
Result: NOTE Package suggested but not available for checking: ‘edgeR’ Flavor: r-oldrel-macos-x86_64

Version: 2.0.3
Check: re-building of vignette outputs
Result: NOTE Note: skipping ‘SIBER.Rnw’ due to unavailable dependencies: 'edgeR' Flavor: r-oldrel-macos-x86_64

Package SillyPutty

Current CRAN status: OK: 12

Package TailRank

Current CRAN status: OK: 12

Package Thresher

Current CRAN status: NOTE: 1, OK: 11

Version: 1.1.3
Check: Rd files
Result: NOTE checkRd: (-1) 01-dataObjects.Rd:18-19: Lost braces 18 | \item \code{sigma}{: A list of length five; each entry is a covariance matrix | ^ checkRd: (-1) 01-dataObjects.Rd:20-23: Lost braces 20 | \item \code{savedSims}{: A list of length five; each entry is a | ^ checkRd: (-1) 01-dataObjects.Rd:24-26: Lost braces 24 | \item \code{savedReap}{: A list of length five; each entry is a | ^ Flavor: r-release-linux-x86_64

Package Umpire

Current CRAN status: OK: 11

Package WayFindR

Current CRAN status: OK: 12