Last updated on 2024-05-03 11:53:39 CEST.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| EbayesThresh | 11 | ||
| ebnm | 11 | ||
| fastTopics | 1 | 10 | |
| mashr | 5 | 6 | |
| mixsqp | 11 | ||
| susieR | 1 | 10 | |
| varbvs | 11 |
Current CRAN status: OK: 11
Current CRAN status: OK: 11
Current CRAN status: ERROR: 1, NOTE: 10
Version: 0.6-163
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘NNLM’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 0.6-163
Check: for GNU extensions in Makefiles
Result: NOTE
GNU make is a SystemRequirements.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 0.6-163
Check: installed package size
Result: NOTE
installed size is 5.6Mb
sub-directories of 1Mb or more:
data 4.3Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-x86_64, r-release-macos-arm64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 0.6-163
Check: tests
Result: ERROR
Running ‘testthat.R’ [17s/18s]
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
2. │ └─base::withVisible(...elt(i))
3. └─fastTopics::umap_plot(fit1, fill = "loading", verbose = FALSE)
4. └─fastTopics::umap_from_topics(fit, dims = 2, ...)
5. └─uwot::umap(...)
6. └─uwot:::uwot(...)
7. └─uwot:::spectral_init(V, ndim = n_components, verbose = verbose)
8. └─uwot:::irlba_tsvd_normalized_laplacian_init(A, ndim, verbose = FALSE)
9. └─uwot:::irlba_spectral_tsvd(L, ndim + 1)
10. ├─base::suppressWarnings(...)
11. │ └─base::withCallingHandlers(...)
12. └─irlba::irlba(L, nv = n, nu = 0, maxit = iters)
[ FAIL 1 | WARN 3 | SKIP 7 | PASS 234 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-macos-arm64
Current CRAN status: NOTE: 5, OK: 6
Version: 0.2.79
Check: dependencies in R code
Result: NOTE
Namespace in Imports field not imported from: ‘softImpute’
All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 0.2.79
Check: installed package size
Result: NOTE
installed size is 8.3Mb
sub-directories of 1Mb or more:
libs 7.4Mb
Flavors: r-release-macos-arm64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Current CRAN status: OK: 11
Current CRAN status: ERROR: 1, OK: 10
Version: 0.12.35
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building 'finemapping.Rmd' using rmarkdown
--- finished re-building 'finemapping.Rmd'
--- re-building 'finemapping_summary_statistics.Rmd' using rmarkdown
--- finished re-building 'finemapping_summary_statistics.Rmd'
--- re-building 'mwe.Rmd' using rmarkdown
--- finished re-building 'mwe.Rmd'
--- re-building 'sparse_susie_eval.Rmd' using rmarkdown
--- finished re-building 'sparse_susie_eval.Rmd'
--- re-building 'susie_refine.Rmd' using rmarkdown
Quitting from lines at lines 24-33 [unnamed-chunk-1] (susie_refine.Rmd)
Error: processing vignette 'susie_refine.Rmd' failed with diagnostics:
Recv failure: Connection was reset
--- failed re-building 'susie_refine.Rmd'
--- re-building 'susie_rss.Rmd' using rmarkdown
--- finished re-building 'susie_rss.Rmd'
--- re-building 'susierss_diagnostic.Rmd' using rmarkdown
Quitting from lines at lines 100-114 [unnamed-chunk-6] (susierss_diagnostic.Rmd)
Error: processing vignette 'susierss_diagnostic.Rmd' failed with diagnostics:
Recv failure: Connection was reset
--- failed re-building 'susierss_diagnostic.Rmd'
--- re-building 'trend_filtering.Rmd' using rmarkdown
--- finished re-building 'trend_filtering.Rmd'
--- re-building 'trendfiltering_derivations.Rnw' using Sweave
--- finished re-building 'trendfiltering_derivations.Rnw'
SUMMARY: processing the following files failed:
'susie_refine.Rmd' 'susierss_diagnostic.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-windows-x86_64
Current CRAN status: OK: 11