Last updated on 2024-05-03 11:53:13 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 2.3.0 | 53.48 | 265.35 | 318.83 | OK | |
| r-devel-linux-x86_64-fedora-clang | 2.3.0 | 445.16 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 2.3.0 | 403.42 | OK | |||
| r-devel-windows-x86_64 | 2.3.0 | 49.00 | 226.00 | 275.00 | NOTE | |
| r-patched-linux-x86_64 | 2.3.0 | 51.86 | 251.66 | 303.52 | OK | |
| r-release-linux-x86_64 | 2.3.0 | 47.89 | 254.78 | 302.67 | OK | |
| r-release-macos-arm64 | 2.3.0 | 105.00 | NOTE | |||
| r-release-macos-x86_64 | 2.3.0 | 185.00 | NOTE | |||
| r-release-windows-x86_64 | 2.3.0 | 50.00 | 224.00 | 274.00 | ERROR | |
| r-oldrel-macos-arm64 | 2.3.0 | 77.00 | NOTE | |||
| r-oldrel-macos-x86_64 | 2.3.0 | 116.00 | NOTE | |||
| r-oldrel-windows-x86_64 | 2.3.0 | 62.00 | 290.00 | 352.00 | NOTE |
Version: 2.3.0
Check: installed package size
Result: NOTE
installed size is 5.6Mb
sub-directories of 1Mb or more:
extdata 1.0Mb
help 1.7Mb
Flavors: r-devel-windows-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 2.3.0
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘BSgenome.Hsapiens.UCSC.hg19’
Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 2.3.0
Check: examples
Result: ERROR
Running examples in 'sigminer-Ex.R' failed
The error most likely occurred in:
> ### Name: sigprofiler
> ### Title: Extract Signatures with SigProfiler
> ### Aliases: sigprofiler sigprofiler_extract sigprofiler_import
> ### sigprofiler_reorder
>
> ### ** Examples
>
> if (FALSE) {
+ load(system.file("extdata", "toy_copynumber_tally_W.RData",
+ package = "sigminer", mustWork = TRUE
+ ))
+
+ reticulate::conda_list()
+
+ sigprofiler_extract(cn_tally_W$nmf_matrix, "~/test/test_sigminer",
+ use_conda = TRUE
+ )
+
+ sigprofiler_extract(cn_tally_W$nmf_matrix, "~/test/test_sigminer",
+ use_conda = FALSE, py_path = "/Users/wsx/anaconda3/bin/python"
+ )
+ }
>
> data("simulated_catalogs")
> sigprofiler_reorder(t(simulated_catalogs$set1))
Downloading reference file...
Warning in download.file(file, tmpFile, method = method, mode = "wb", quiet = !showProgress) :
URL 'https://raw.githubusercontent.com/AlexandrovLab/SigProfilerMatrixGenerator/master/SigProfilerMatrixGenerator/references/matrix/BRCA_example/BRCA_example.SBS96.all': status was 'SSL connect error'
Error in download.file(file, tmpFile, method = method, mode = "wb", quiet = !showProgress) :
cannot open URL 'https://raw.githubusercontent.com/AlexandrovLab/SigProfilerMatrixGenerator/master/SigProfilerMatrixGenerator/references/matrix/BRCA_example/BRCA_example.SBS96.all'
Calls: sigprofiler_reorder -> <Anonymous> -> download.file
Execution halted
Flavor: r-release-windows-x86_64