Uses of Package
org.snpeff.stats
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Packages that use org.snpeff.stats Package Description org.snpeff.coverage org.snpeff.interval org.snpeff.nextProt org.snpeff.snpEffect.commandLine org.snpeff.stats org.snpeff.stats.plot -
Classes in org.snpeff.stats used by org.snpeff.coverage Class Description CountByKey Counters indexed by key.CountByType Counters indexed by 'type' (type is a generic string that can mean anything)CoverageByType -
Classes in org.snpeff.stats used by org.snpeff.interval Class Description CountByType Counters indexed by 'type' (type is a generic string that can mean anything) -
Classes in org.snpeff.stats used by org.snpeff.nextProt Class Description CountByType Counters indexed by 'type' (type is a generic string that can mean anything) -
Classes in org.snpeff.stats used by org.snpeff.snpEffect.commandLine Class Description VariantEffectStats Variants effect statisticsVariantStats Variants statistics -
Classes in org.snpeff.stats used by org.snpeff.stats Class Description ChrPosStats How many changes per position do we have in a chromosome.CountByType Counters indexed by 'type' (type is a generic string that can mean anything)GeneCountByTypeTable Count for each 'type' and 'gene'.GenotypeStats Calculate statistics on genotypeIntStats A simple class that does some basic statistics on integer numbersMineMarkerIntervals Mine marker intervals: I.e.ObservedOverExpected Observed over expected values (o/e) ratios E.g.: CpG dinucleotides in a sequenceSamplingStats Perform stats by analyzing some samplesTsTvStats Calculate Ts/Tv rations per sample (transitions vs transversions) -
Classes in org.snpeff.stats used by org.snpeff.stats.plot Class Description CoverageByType