Class TestCasesEffectCollapse


  • public class TestCasesEffectCollapse
    extends TestCasesBase
    Test Splice sites variants

    The sample transcript used is: Transcript:1:751-1139, strand: +, id:transcript_0, Protein Exons: 1:751-810 'exon_0_0', rank: 1, frame: ., sequence: cgattgacctacatagtaatgagttttgttggtccgtaagacttcgcccaaaaccgcgca 1:1013-1139 'exon_0_1', rank: 2, frame: ., sequence: cttcgactactcgggggtctaagcacgttttctgcagggaaagtaatatatgcttgtgcgcaaccatggtaacagggattcacggccccgttaatggtatgacctaagccccatacgagtcatccaa CDS : cgattgacctacatagtaatgagttttgttggtccgtaagacttcgcccaaaaccgcgcacttcgactactcgggggtctaagcacgttttctgcagggaaagtaatatatgcttgtgcgcaaccatggtaacagggattcacggccccgttaatggtatgacctaagccccatacgagtcatccaa Protein : RLTYIVMSFVGP*DFAQNRALRLLGGLSTFSAGKVIYACAQPW*QGFTAPLMV*PKPHTSHP?

    Author:
    pcingola
    • Constructor Detail

      • TestCasesEffectCollapse

        public TestCasesEffectCollapse()
    • Method Detail

      • test_01

        @Test
        public void test_01()
      • test_02

        @Test
        public void test_02()
      • test_03

        @Test
        public void test_03()
      • test_04

        @Test
        public void test_04()
      • test_05

        @Test
        public void test_05()