Class TestCasesCds
- java.lang.Object
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- org.snpeff.snpEffect.testCases.unity.TestCasesBase
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- org.snpeff.snpEffect.testCases.unity.TestCasesCds
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public class TestCasesCds extends TestCasesBase
Test random SNP changes- Author:
- pcingola
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Field Summary
Fields Modifier and Type Field Description static int
N
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Fields inherited from class org.snpeff.snpEffect.testCases.unity.TestCasesBase
addUtrs, BASE_DIR, chromoBases, chromoSequence, chromosome, codonTable, config, debug, gene, genome, genomeName, maxExons, maxGeneLen, maxTranscripts, minExons, numGenes, onlyMinusStrand, onlyPlusStrand, prefixes, rand, randSeed, shiftHgvs, snpEffectPredictor, spliceRegionExonSize, spliceRegionIntronMax, spliceRegionIntronMin, testType, transcript, verbose
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Constructor Summary
Constructors Constructor Description TestCasesCds()
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description protected void
init()
void
test_CdsPos()
void
test_cdsStartEnd_1()
Simple CDS start & CSD end casevoid
test_cdsStartEnd_2()
CDS start & CSD end case where transcript is ALL UTR (nothing codes, presumably because of a database annotation error)-
Methods inherited from class org.snpeff.snpEffect.testCases.unity.TestCasesBase
after, before, checkApply, checkApplyDel, checkApplyIns, checkApplyMixed, checkApplyMnp, checkApplySnp, checkEffect, checkEffect, formatVersion, hasEffect, initRand, initSnpEffPredictor, initSnpEffPredictor, path, pathClassName, prependSequenceToFirstExon
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Method Detail
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init
protected void init()
- Overrides:
init
in classTestCasesBase
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test_CdsPos
@Test public void test_CdsPos()
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test_cdsStartEnd_1
@Test public void test_cdsStartEnd_1()
Simple CDS start & CSD end case
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test_cdsStartEnd_2
@Test public void test_cdsStartEnd_2()
CDS start & CSD end case where transcript is ALL UTR (nothing codes, presumably because of a database annotation error)
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