Class NextProtHandler

  • All Implemented Interfaces:
    org.xml.sax.ContentHandler, org.xml.sax.DTDHandler, org.xml.sax.EntityResolver, org.xml.sax.ErrorHandler

    public class NextProtHandler
    extends org.xml.sax.helpers.DefaultHandler
    Handler used in XML parsing for NextProt database It keeps track of the tags and saves state data to create Markers using NextProtMarkerFactory http://www.nextprot.org/
    Author:
    pablocingolani
    • Method Summary

      All Methods Instance Methods Concrete Methods 
      Modifier and Type Method Description
      void characters​(char[] ch, int start, int length)  
      void countMissingCategory​(java.lang.String category)  
      void endElement​(java.lang.String uri, java.lang.String localName, java.lang.String qName)
      Parse XML's element end
      CountByType getMissingCategories()  
      void startElement​(java.lang.String uri, java.lang.String localName, java.lang.String qName, org.xml.sax.Attributes attributes)
      Parse XML's element start
      • Methods inherited from class org.xml.sax.helpers.DefaultHandler

        endDocument, endPrefixMapping, error, fatalError, ignorableWhitespace, notationDecl, processingInstruction, resolveEntity, setDocumentLocator, skippedEntity, startDocument, startPrefixMapping, unparsedEntityDecl, warning
      • Methods inherited from class java.lang.Object

        clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
    • Method Detail

      • characters

        public void characters​(char[] ch,
                               int start,
                               int length)
                        throws org.xml.sax.SAXException
        Specified by:
        characters in interface org.xml.sax.ContentHandler
        Overrides:
        characters in class org.xml.sax.helpers.DefaultHandler
        Throws:
        org.xml.sax.SAXException
      • countMissingCategory

        public void countMissingCategory​(java.lang.String category)
      • endElement

        public void endElement​(java.lang.String uri,
                               java.lang.String localName,
                               java.lang.String qName)
                        throws org.xml.sax.SAXException
        Parse XML's element end
        Specified by:
        endElement in interface org.xml.sax.ContentHandler
        Overrides:
        endElement in class org.xml.sax.helpers.DefaultHandler
        Throws:
        org.xml.sax.SAXException
      • getMissingCategories

        public CountByType getMissingCategories()
      • startElement

        public void startElement​(java.lang.String uri,
                                 java.lang.String localName,
                                 java.lang.String qName,
                                 org.xml.sax.Attributes attributes)
                          throws org.xml.sax.SAXException
        Parse XML's element start
        Specified by:
        startElement in interface org.xml.sax.ContentHandler
        Overrides:
        startElement in class org.xml.sax.helpers.DefaultHandler
        Throws:
        org.xml.sax.SAXException