Package org.snpeff.align
Class SmithWaterman
- java.lang.Object
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- org.snpeff.align.NeedlemanWunsch
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- org.snpeff.align.SmithWaterman
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public class SmithWaterman extends NeedlemanWunsch
Smith-Waterman (local sequence alignment) algorithm for sequence alignment (short strings, since it's not memory optimized)- Author:
- pcingola
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Constructor Summary
Constructors Constructor Description SmithWaterman(java.lang.String a, java.lang.String b)
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Method Summary
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Methods inherited from class org.snpeff.align.NeedlemanWunsch
align, getAlignment, getAlignmentScore, getOffset, setDeletion, setMatch, setMissMatch, setUseSpace, toString
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