Class GeneIds


  • public class GeneIds
    extends java.lang.Object
    Maps different Gene IDs: - ENSEMBL Gene ID to transcript ID - ENSEMBL Gene ID to Gene Name - ENSEMBL Gene ID to Refseq Gene ID - ENSEMBL Gene ID to Refseq Protein ID
    Author:
    pcingola
    • Constructor Detail

      • GeneIds

        public GeneIds​(java.lang.String fileName)
    • Method Detail

      • getId2geneName

        public IdMap getId2geneName()
      • getId2refseqId

        public IdMap getId2refseqId()
      • getId2refseqProtId

        public IdMap getId2refseqProtId()
      • getId2tr

        public IdMap getId2tr()
      • load

        protected void load​(java.lang.String fileName)
        Load data from file
        Parameters:
        fileName -