Package org.snpeff.binseq.indexer
Class OverlapFilterCompareAllAll
- java.lang.Object
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- org.snpeff.binseq.indexer.OverlapFilterCompareAllAll
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- All Implemented Interfaces:
OverlapFilter<DnaSequenceId>
public class OverlapFilterCompareAllAll extends java.lang.Object implements OverlapFilter<DnaSequenceId>
Only allow overlaps between sequences mapped to same/different partition
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Constructor Summary
Constructors Constructor Description OverlapFilterCompareAllAll()
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description boolean
considerOverlap(DnaSequenceId seq1, DnaSequenceId seq2)
Consider overlap between two sequences?
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Method Detail
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considerOverlap
public boolean considerOverlap(DnaSequenceId seq1, DnaSequenceId seq2)
Consider overlap between two sequences?- Specified by:
considerOverlap
in interfaceOverlapFilter<DnaSequenceId>
- Parameters:
seq1
-seq2
-- Returns:
- true if sequences should be considered for overlapping
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