Package org.snpeff.svg
Class SvgBnd
- java.lang.Object
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- org.snpeff.svg.Svg
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- org.snpeff.svg.SvgBnd
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public class SvgBnd extends Svg
Create an SVG representation of a BND (translocation) variant In a VCF file, there are four possible translocations (BND) entries: REF ALT Meaning type 1: s t[p[ piece extending to the right of p is joined after t type 2: s t]p] reverse comp piece extending left of p is joined after t type 3: s ]p]t piece extending to the left of p is joined before t type 4: s [p[t reverse comp piece extending right of p is joined before t
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Field Summary
Fields Modifier and Type Field Description static int
BND_CURL_SIZE
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Fields inherited from class org.snpeff.svg.Svg
debug, DEFAULT_BASE_Y, DEFAULT_SIZE_X, DEFAULT_SIZE_Y, LINE_COLOR_STROKE, LINE_STROKE_WIDTH, RECT_COLOR_FILL, RECT_COLOR_STROKE, RECT_HEIGHT, RECT_STROKE_WIDTH, TEXT_SIZE, TEXT_STYLE
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Constructor Summary
Constructors Constructor Description SvgBnd(VariantBnd varBnd, Svg svgTr1, Svg svgTr2)
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Field Detail
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BND_CURL_SIZE
public static final int BND_CURL_SIZE
- See Also:
- Constant Field Values
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Constructor Detail
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SvgBnd
public SvgBnd(VariantBnd varBnd, Svg svgTr1, Svg svgTr2)
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