Class TestCasesHgvsProtDup


  • public class TestCasesHgvsProtDup
    extends TestCasesBase
    Test case
    • Constructor Detail

      • TestCasesHgvsProtDup

        public TestCasesHgvsProtDup()
    • Method Detail

      • test_01

        @Test
        public void test_01()
        Test case: p.Gly4_Gln6dup in the sequence MKMGHQQQCC denotes a duplication of amino acids Glycine-4 (Gly, G) to Glutamine-6 (Gln, Q) (i.e. MKMGHQGHQQQCC)

        Reference: http://www.hgvs.org/mutnomen/recs-prot.html#dup

      • test_02

        @Test
        public void test_02()
        Reference: http://www.hgvs.org/mutnomen/recs-prot.html#dup duplicating insertions in single amino acid stretches (or short tandem repeats) are described as a duplication, e.g. a duplicating HQ insertion in the HQ-tandem repeat sequence of MKMGHQHQCC to MKMGHQHQHQCC is described as p.His7_Gln8dup (not p.Gln8_Cys9insHisGln)