Uses of Class
org.snpeff.nextProt.Location
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Packages that use Location Package Description org.snpeff.nextProt -
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Uses of Location in org.snpeff.nextProt
Subclasses of Location in org.snpeff.nextProt Modifier and Type Class Description class
LocationTargetIsoform
A location respect to an isoformclass
LocationTargetIsoformInteraction
A location respect to two locations within an isoform In this case "start" and "end" are not really an interval, but an interaction between two locations (e.g.Methods in org.snpeff.nextProt that return types with arguments of type Location Modifier and Type Method Description java.util.List<Location>
NextProtXmlAnnotation. getLocations()
Methods in org.snpeff.nextProt with parameters of type Location Modifier and Type Method Description Markers
NextProtMarkerFactory. addMarkers(NextProtXmlEntry entry, NextProtXmlIsoform isoform, NextProtXmlAnnotation annotation, Location location, java.lang.String trId)
Create markers and add themMarkers
NextProtMarkerFactory. nextProt(Transcript tr, NextProtXmlAnnotation annotation, Location location)
Create a list of NextProt markers according to this annotation
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