Package org.snpeff.interval.codonChange
Class CodonChangeInv
- java.lang.Object
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- org.snpeff.interval.codonChange.CodonChange
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- org.snpeff.interval.codonChange.CodonChangeInv
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public class CodonChangeInv extends CodonChange
Calculate codon changes produced by an inversion- Author:
- pcingola
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Field Summary
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Fields inherited from class org.snpeff.interval.codonChange.CodonChange
CODON_SIZE, showCodonChange
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Constructor Summary
Constructors Constructor Description CodonChangeInv(Variant variant, Transcript transcript, VariantEffects variantEffects)
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description void
codonChange()
Calculate a list of codon changes-
Methods inherited from class org.snpeff.interval.codonChange.CodonChange
additionalEffect, cdsBaseNumber, codonChange, codonsAlt, codonsRef, codonsRef, effect, effectNoCodon, effectNoCodon, factory, intersectsExons, netCdsChange, toString
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Constructor Detail
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CodonChangeInv
public CodonChangeInv(Variant variant, Transcript transcript, VariantEffects variantEffects)
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Method Detail
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codonChange
public void codonChange()
Description copied from class:CodonChange
Calculate a list of codon changes- Overrides:
codonChange
in classCodonChange
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