Class SamHeaderRecordSq


  • public class SamHeaderRecordSq
    extends SamHeaderRecord
    SQ header: Reference sequence dictionary. The order of @SQ lines defines the alignment sorting order.
    Author:
    pcingola
    • Constructor Detail

      • SamHeaderRecordSq

        public SamHeaderRecordSq​(java.lang.String line)
    • Method Detail

      • getAssembly

        public java.lang.String getAssembly()
      • getLength

        public int getLength()
      • getMd5

        public java.lang.String getMd5()
      • getSequenceName

        public java.lang.String getSequenceName()
      • getSpecies

        public java.lang.String getSpecies()
      • getUri

        public java.lang.String getUri()
      • parseField

        protected void parseField​(java.lang.String tag,
                                  java.lang.String value)
        Description copied from class: SamHeaderRecord
        Parse a field for this record
        Specified by:
        parseField in class SamHeaderRecord
      • toString

        public java.lang.String toString()
        Overrides:
        toString in class java.lang.Object