NeedlemanWunsch |
Needleman-Wunsch (global sequence alignment) algorithm for sequence alignment (short strings, since it's not memory optimized)
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NeedlemanWunschOverlap |
Needleman-Wunsch algorithm for string alignment (short strings, since it's not memory optimized)
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SmithWaterman |
Smith-Waterman (local sequence alignment) algorithm for sequence alignment (short strings, since it's not memory optimized)
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VariantRealign |
Re-align a variant towards the leftmost (rightmost) position
Note: We perform a 'progressive' realignment, asking for more
reference sequence as we need it
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VcfRefAltAlign |
Needleman-Wunsch (global sequence alignment) algorithm for sequence alignment
Only used for short strings (algorithm is not optimized)
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