Class NextProtXmlIsoform


  • public class NextProtXmlIsoform
    extends NextProtXmlNode
    Mimics the 'isoform-mapping' in a NextProt XML file
    Author:
    Pablo Cingolani
    • Constructor Detail

      • NextProtXmlIsoform

        public NextProtXmlIsoform​(java.lang.String accession)
    • Method Detail

      • addProteinMapping

        public void addProteinMapping​(org.xml.sax.Attributes attributes)
        Add a transcript mapping
      • addTranscriptMapping

        public void addTranscriptMapping​(org.xml.sax.Attributes attributes)
        Add a protein mapping
      • getProteinIds

        public java.util.Set<java.lang.String> getProteinIds()
      • getSequence

        public java.lang.String getSequence()
      • getTranscriptIds

        public java.util.Set<java.lang.String> getTranscriptIds()
      • setSequence

        public void setSequence​(java.lang.String sequence)
        Add an Isoform sequence
      • toString

        public java.lang.String toString()
        Overrides:
        toString in class java.lang.Object