Class VariantNonRef

  • All Implemented Interfaces:
    java.io.Serializable, java.lang.Cloneable, java.lang.Comparable<Interval>, TxtSerializable

    public class VariantNonRef
    extends Variant
    A variant respect to non-reference (e.g. comparing cancer vs. somatic tissue).
    Author:
    pcingola
    See Also:
    Serialized Form
    • Constructor Detail

      • VariantNonRef

        public VariantNonRef()
      • VariantNonRef

        public VariantNonRef​(Variant variant,
                             Variant variantRef)
    • Method Detail

      • getGenotype

        public java.lang.String getGenotype()
        Overrides:
        getGenotype in class Variant
      • getVariantRef

        public Variant getVariantRef()
      • isNonRef

        public boolean isNonRef()
        Overrides:
        isNonRef in class Variant
      • realignLeft

        public Variant realignLeft()
        Description copied from class: Variant
        Create a new variant realigning it towards the leftmost position
        Overrides:
        realignLeft in class Variant
      • setVariantRef

        public void setVariantRef​(Variant variantRef)
      • toString

        public java.lang.String toString()
        Overrides:
        toString in class Variant