Package org.snpeff.fileIterator
Class RegulationFileIterator
- java.lang.Object
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- org.snpeff.fileIterator.FileIterator<M>
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- org.snpeff.fileIterator.MarkerFileIterator<Regulation>
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- org.snpeff.fileIterator.RegulationFileIterator
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- All Implemented Interfaces:
java.lang.Iterable<Regulation>
,java.util.Iterator<Regulation>
- Direct Known Subclasses:
RegulationBedFileIterator
,RegulationGffFileIterator
public abstract class RegulationFileIterator extends MarkerFileIterator<Regulation>
Opens a regulation file and create Regulation elements.- Author:
- pcingola
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Field Summary
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Fields inherited from class org.snpeff.fileIterator.MarkerFileIterator
createChromos, genome, ignoreChromosomeErrors, inOffset
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Constructor Summary
Constructors Constructor Description RegulationFileIterator(java.lang.String fileName, int inOffset)
RegulationFileIterator(java.lang.String fileName, Genome genome, int inOffset)
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Method Summary
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Methods inherited from class org.snpeff.fileIterator.MarkerFileIterator
getChromosome, getGenome, init, isIgnoreChromosomeErrors, loadMarkers, parsePosition, sanityCheckChromo, setCreateChromos, setIgnoreChromosomeErrors, setInOffset
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Methods inherited from class org.snpeff.fileIterator.FileIterator
close, countNewLineChars, getFilePointer, getLine, getLineNum, guessNewLineChars, hasNext, hasSeek, isDebug, iterator, load, next, readLine, readNext, ready, remove, seek, setAutoClose, setDebug, setVerbose, toString
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Constructor Detail
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RegulationFileIterator
public RegulationFileIterator(java.lang.String fileName, Genome genome, int inOffset)
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RegulationFileIterator
public RegulationFileIterator(java.lang.String fileName, int inOffset)
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