Package org.snpeff.binseq
Class DnaAndQualitySequenceWithId
- java.lang.Object
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- org.snpeff.binseq.BinarySequence
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- org.snpeff.binseq.DnaAndQualitySequence
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- org.snpeff.binseq.DnaAndQualitySequenceWithId
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- All Implemented Interfaces:
java.io.Serializable
,java.lang.Cloneable
,java.lang.Comparable<BinarySequence>
public class DnaAndQualitySequenceWithId extends DnaAndQualitySequence
DnaAndQualitySequence with an ID- Author:
- pcingola
- See Also:
- Serialized Form
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Constructor Summary
Constructors Constructor Description DnaAndQualitySequenceWithId(java.lang.String seqStr)
DnaAndQualitySequenceWithId(java.lang.String seqStr, java.lang.String qualityStr, org.biojava.nbio.genome.io.fastq.FastqVariant type)
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Method Summary
All Methods Static Methods Instance Methods Concrete Methods Modifier and Type Method Description static DnaAndQualitySequenceWithId
empty()
long
getId()
protected void
readDataStream(java.io.DataInputStream dataInStream)
Read data in binary formatvoid
write(java.io.DataOutputStream dataOutStream)
Write data in binary format-
Methods inherited from class org.snpeff.binseq.DnaAndQualitySequence
compareTo, getBase, getCode, getCoder, getCodes, getQuality, getQuality, getSequence, hashCode, indexOf, lastIndexOf, length, overlap, read, reverseWc, set, set, toString
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Methods inherited from class org.snpeff.binseq.BinarySequence
clone, setQuality
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Method Detail
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empty
public static DnaAndQualitySequenceWithId empty()
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getId
public long getId()
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readDataStream
protected void readDataStream(java.io.DataInputStream dataInStream) throws java.io.IOException
Read data in binary format- Overrides:
readDataStream
in classDnaAndQualitySequence
- Parameters:
dataOutStream
-- Throws:
java.io.IOException
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write
public void write(java.io.DataOutputStream dataOutStream) throws java.io.IOException
Write data in binary format- Overrides:
write
in classDnaAndQualitySequence
- Parameters:
dataOutStream
-- Throws:
java.io.IOException
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