Class VcfHapMapFileIterator

  • All Implemented Interfaces:
    java.lang.Iterable<VcfEntry>, java.util.Iterator<VcfEntry>

    public class VcfHapMapFileIterator
    extends MarkerFileIterator<VcfEntry>
    Opens a Hapmap phased file and iterates over all entries, returning VcfEntries for each line Note: Each HapMap file has one chromosome. The reference sequence for the chromosome is read from a fasta file
    Author:
    pcingola
    • Field Detail

      • genome

        protected Genome genome
    • Constructor Detail

      • VcfHapMapFileIterator

        public VcfHapMapFileIterator​(java.lang.String hapMapFileName,
                                     java.lang.String fatsaFileName,
                                     Genome genome)