Class SnpEffCmdLen

  • All Implemented Interfaces:
    CommandLine

    public class SnpEffCmdLen
    extends SnpEff
    Calculate the maximum interval length by type, for all markers in a genome
    Author:
    pcingola
    • Constructor Detail

      • SnpEffCmdLen

        public SnpEffCmdLen()
    • Method Detail

      • parseArgs

        public void parseArgs​(java.lang.String[] args)
        Description copied from class: SnpEff
        Parse command line arguments
        Specified by:
        parseArgs in interface CommandLine
        Overrides:
        parseArgs in class SnpEff
      • run

        public boolean run()
        Run
        Specified by:
        run in interface CommandLine
        Overrides:
        run in class SnpEff
        Returns:
      • usage

        public void usage​(java.lang.String message)
        Show usage and exit
        Specified by:
        usage in interface CommandLine
        Overrides:
        usage in class SnpEff