Package org.snpeff.interval
Class ProteinStructuralInteractionLocus
- java.lang.Object
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- org.snpeff.interval.Interval
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- org.snpeff.interval.Marker
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- org.snpeff.interval.ProteinInteractionLocus
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- org.snpeff.interval.ProteinStructuralInteractionLocus
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- All Implemented Interfaces:
java.io.Serializable
,java.lang.Cloneable
,java.lang.Comparable<Interval>
,TxtSerializable
public class ProteinStructuralInteractionLocus extends ProteinInteractionLocus
Protein interaction: An amino acid that is "in contact" with another amino acid. This can be either within the same protein or interacting with another protein. Evidence form PDB crystallized structures- Author:
- pablocingolani
- See Also:
- Serialized Form
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Field Summary
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Fields inherited from class org.snpeff.interval.ProteinInteractionLocus
debug
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Fields inherited from class org.snpeff.interval.Interval
chromosomeNameOri, end, id, parent, start, strandMinus
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Constructor Summary
Constructors Constructor Description ProteinStructuralInteractionLocus()
ProteinStructuralInteractionLocus(Transcript parent, int start, int end, java.lang.String id)
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Method Summary
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Methods inherited from class org.snpeff.interval.ProteinInteractionLocus
cloneShallow, factory, variantEffect
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Methods inherited from class org.snpeff.interval.Marker
adjust, apply, applyDel, applyDup, applyIns, applyMixed, clone, codonTable, compareTo, compareToPos, distance, distanceBases, getParent, getType, idChain, idChain, idChain, includes, intersect, isAdjustIfParentDoesNotInclude, isDeferredAnalysis, isShowWarningIfParentDoesNotInclude, minus, query, query, readTxt, serializeParse, serializeSave, shouldApply, toString, union, variantEffectNonRef
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Methods inherited from class org.snpeff.interval.Interval
equals, findParent, getChromosome, getChromosomeName, getChromosomeNameOri, getChromosomeNum, getEnd, getGenome, getGenomeName, getId, getStart, getStrand, hashCode, intersects, intersects, intersects, intersects, intersectSize, isCircular, isSameChromo, isStrandMinus, isStrandPlus, isValid, setChromosomeNameOri, setEnd, setId, setParent, setStart, setStrandMinus, shiftCoordinates, size, toStr, toStringAsciiArt, toStrPos
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Constructor Detail
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ProteinStructuralInteractionLocus
public ProteinStructuralInteractionLocus()
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ProteinStructuralInteractionLocus
public ProteinStructuralInteractionLocus(Transcript parent, int start, int end, java.lang.String id)
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