Class TestCasesIntegrationMixedVariants

    • Constructor Detail

      • TestCasesIntegrationMixedVariants

        public TestCasesIntegrationMixedVariants()
    • Method Detail

      • compareVep

        public void compareVep​(java.lang.String genome,
                               java.lang.String vcf)
        Compare with results from ENSEMBL's VEP to SnpEff Use VCF having VEP's results
      • test_01_MixedVep

        @Test
        public void test_01_MixedVep()
        Make sure we can read VCF and parse variants without producing any exception
      • test_02_MixedVep

        @Test
        public void test_02_MixedVep()
      • test_03_MixedVep

        @Test
        public void test_03_MixedVep()
      • test_04_MixedVep

        @Test
        public void test_04_MixedVep()
      • test_05_MixedVep

        @Test
        public void test_05_MixedVep()
      • test_06_MixedVep

        @Test
        public void test_06_MixedVep()
      • test_07_MixedVep

        @Test
        public void test_07_MixedVep()
      • test_08_MixedVep

        @Test
        public void test_08_MixedVep()
      • test_09_MixedVep

        @Test
        public void test_09_MixedVep()
      • test_11_ExonRank

        @Test
        public void test_11_ExonRank()