Uses of Class
org.snpeff.snpEffect.testCases.unity.TestCasesBase
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Packages that use TestCasesBase Package Description org.snpeff.snpEffect.testCases.integration org.snpeff.snpEffect.testCases.unity -
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Uses of TestCasesBase in org.snpeff.snpEffect.testCases.integration
Subclasses of TestCasesBase in org.snpeff.snpEffect.testCases.integration Modifier and Type Class Description class
TestCasesAnn
Test case -
Uses of TestCasesBase in org.snpeff.snpEffect.testCases.unity
Subclasses of TestCasesBase in org.snpeff.snpEffect.testCases.unity Modifier and Type Class Description class
TestCasesAnnParse
Test case for parsing ANN fieldsclass
TestCasesApplyDel
Test cases: apply a variant (DEL) to a transcriptclass
TestCasesApplyIns
Test cases: apply a variant (INS) to a transcriptclass
TestCasesApplyMixed
Test cases: apply a variant (MIXED) to a transcriptclass
TestCasesApplyMnp
Test cases: apply a variant (MNP) to a transcriptclass
TestCasesApplySnp
Test cases: apply a variant (SNP) to a transcriptclass
TestCasesBaseApply
Test caseclass
TestCasesBuild
Test caseclass
TestCasesCds
Test random SNP changesclass
TestCasesDels
Test random DEL changesclass
TestCasesDnaSequence
class
TestCasesEffectCollapse
Test Splice sites variantsclass
TestCasesEffectCollapse2
Test caseclass
TestCasesFasta
Test case for FASTA file parsingclass
TestCasesFileIndexChrPos
Test cases for file index (chr:pos index on files)class
TestCasesHgvs
Test case for basic HGV annotationsclass
TestCasesHgvsDnaDup
Test caseclass
TestCasesHgvsDnaDupNegative
Test cases for HGVS's 'dup' on the negative strandclass
TestCasesHgvsProtDup
Test caseclass
TestCasesIns
Test random SNP changesclass
TestCasesIntergenic
Test intergenic markersclass
TestCasesIntervals
class
TestCasesIntervalVariant
Test random Interval Variants (e.g.class
TestCasesIntStats
class
TestCasesJaspar
Test case for Jaspar parsingclass
TestCasesMnps
Test random SNP changesclass
TestCasesProteinInteraction
Test cases for protein interactionclass
TestCasesSeekableReader
Seekable file reader test caseclass
TestCasesSequenceIndexer
class
TestCasesSnps
Test random SNP changesclass
TestCasesSpliceRegion
Test Splice sites variantsclass
TestCasesSpliceSite
Test Splice sites variantsclass
TestCasesStructuralDel
Test case Gene: geneId1 1:957-1157, strand: +, id:transcript_0, Protein Exons: 1:957-988 'exon_0_0', rank: 1, frame: ., sequence: gttgcttgaatactgtatagccttgccattgt 1:1045-1057 'exon_0_1', rank: 2, frame: ., sequence: tgtgttgctaact 1:1148-1157 'exon_0_2', rank: 3, frame: ., sequence: agacatggac CDS : gttgcttgaatactgtatagccttgccattgttgtgttgctaactagacatggac Protein : VA*ILYSLAIVVLLTRHG?class
TestCasesStructuralDup
Test case for structural variants: Duplicationsclass
TestCasesStructuralInv
Test cases for structural variants: Inversionsclass
TestCasesVariantRealignment
Test cases for variant realignmentclass
TestCasesVcf
VCF parsing test casesclass
TestCasesZzz
Test playground
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