# Bayesian Latent Gaussian Modelling using INLA and Extensions

## Documentation for package ‘inlabru’ version 2.15.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

A B C D E F G I L M N P R S T misc

inlabru-package | inlabru

## -- A --

as.bru_options | Create or update an options objects
as.character.bru_log | Access methods for 'bru_log' objects
as_bm_list | Methods for mapper lists
as_bm_list.bm_list | Methods for mapper lists
as_bm_list.bru_comp_list | Methods for mapper lists
as_bm_list.list | Methods for mapper lists
as_bru_comp | Conversion methods for 'bru_comp' and 'bru_comp_list' objects
as_bru_comp.bru_comp | Conversion methods for 'bru_comp' and 'bru_comp_list' objects
as_bru_comp_list | Conversion methods for 'bru_comp' and 'bru_comp_list' objects
as_bru_comp_list.bru | Conversion methods for 'bru_comp' and 'bru_comp_list' objects
as_bru_comp_list.bru_comp | Conversion methods for 'bru_comp' and 'bru_comp_list' objects
as_bru_comp_list.bru_comp_list | Conversion methods for 'bru_comp' and 'bru_comp_list' objects
as_bru_comp_list.bru_info | Conversion methods for 'bru_comp' and 'bru_comp_list' objects
as_bru_comp_list.bru_model | Conversion methods for 'bru_comp' and 'bru_comp_list' objects
as_bru_comp_list.formula | Conversion methods for 'bru_comp' and 'bru_comp_list' objects
as_bru_comp_list.list | Conversion methods for 'bru_comp' and 'bru_comp_list' objects
as_bru_info | Methods for bru_info objects
as_bru_info.bru | Methods for bru_info objects
as_bru_info.bru_info | Methods for bru_info objects
as_bru_mapper | Methods for mapper extraction
as_bru_mapper.bru_comp | Methods for mapper extraction
as_bru_mapper.bru_mapper | Methods for mapper extraction
as_bru_mapper.bru_subcomp | Methods for mapper extraction
as_bru_model | Methods for bru_info objects
as_bru_model.bru | Methods for bru_info objects
as_bru_model.bru_info | Methods for bru_info objects
as_bru_model.bru_model | Methods for bru_info objects
as_bru_obs | Conversion methods for 'bru_obs' and 'bru_obs_list' objects
as_bru_obs.bru_obs | Conversion methods for 'bru_obs' and 'bru_obs_list' objects
as_bru_obs_list | Conversion methods for 'bru_obs' and 'bru_obs_list' objects
as_bru_obs_list.bru | Conversion methods for 'bru_obs' and 'bru_obs_list' objects
as_bru_obs_list.bru_info | Conversion methods for 'bru_obs' and 'bru_obs_list' objects
as_bru_obs_list.bru_model | Conversion methods for 'bru_obs' and 'bru_obs_list' objects
as_bru_obs_list.bru_obs | Conversion methods for 'bru_obs' and 'bru_obs_list' objects
as_bru_obs_list.bru_obs_list | Conversion methods for 'bru_obs' and 'bru_obs_list' objects
as_bru_obs_list.list | Conversion methods for 'bru_obs' and 'bru_obs_list' objects
augment.bru | Augment a bru model fit with fitted values

## -- B --

bincount | 1D LGCP bin count simulation and comparison with data
bm_aggregate | Mapper for aggregation
bm_autodetect | Interface between 'bru_input' and 'bru_mapper'
bm_collect | Mapper for concatenated variables
bm_const | Constant mapper
bm_expr | Mapper for general expressions
bm_factor | Mapper for factor variables
bm_fmesher | Mapper for general 'fmesher' function space objects
bm_fm_mesh_1d | Mapper for 'fm_mesh_1d'
bm_harmonics | Mapper for cos/sin functions
bm_index | Mapper for indexed variables
bm_linear | Mapper for a linear effect
bm_list | Methods for mapper lists
bm_logitaverage | Mapper for logit-sum-inverse-logit aggregation
bm_logsumexp | Mapper for log-sum-exp aggregation
bm_marginal | Mapper for marginal distribution transformation
bm_matrix | Mapper for matrix multiplication
bm_multi | Mapper for tensor product domains
bm_pipe | Mapper for linking several mappers in sequence
bm_reparam | Mapper for reparameterising mapper states
bm_repeat | Mapper for repeating a mapper
bm_scale | Mapper for element-wise scaling
bm_shift | Mapper for element-wise shifting
bm_sum | Mapper for adding multiple mappers
bm_taylor | Mapper for linear Taylor approximations
bru | Convenient model fitting using (iterated) INLA
bru_block_gcpo | Extract block-averaged GCPO scores from one or more fitted bru models
bru_comp | Latent model component construction
bru_comp.character | Latent model component construction
bru_component | Latent model component construction
bru_component_eval | Evaluate component values in predictor expressions
bru_component_list | Methods for inlabru component lists
bru_comp_env | Get/set component environment data
bru_comp_env<- | Get/set component environment data
bru_comp_env_extra | Get/set component environment data
bru_comp_env_extra<- | Get/set component environment data
bru_comp_eval | Evaluate component values in predictor expressions
bru_comp_list | Methods for inlabru component lists
bru_comp_list.bru_comp | Methods for inlabru component lists
bru_comp_list.bru_comp_list | Methods for inlabru component lists
bru_comp_list.formula | Methods for inlabru component lists
bru_comp_list.list | Methods for inlabru component lists
bru_convergence_plot | Plot inlabru convergence diagnostics
bru_eval | Evaluate or sample from a posterior result given a model and locations
bru_fill_missing | Fill in missing values in Spatial grids
bru_forward_transformation | Transformation tools
bru_gcpo_table | Compare block-averaged GCPO scores across multiple fitted bru models
bru_get_mapper | Extract mapper information from INLA model component objects
bru_get_mapper.inla.cgeneric | Extract mapper information from INLA model component objects
bru_get_mapper.inla.rgeneric | Extract mapper information from INLA model component objects
bru_get_mapper.inla.spde | Extract mapper information from INLA model component objects
bru_get_mapper.inla_model_reparam | Extract mapper information from INLA model component objects
bru_get_mapper_safely | Extract mapper information from INLA model component objects
bru_index | Extract predictor or component index information
bru_index.bru | Extract predictor or component index information
bru_index.bru_comp | Extract predictor or component index information
bru_index.bru_comp_list | Extract predictor or component index information
bru_index.bru_info | Extract predictor or component index information
bru_index.bru_model | Extract predictor or component index information
bru_index.bru_obs | Extract predictor or component index information
bru_index.bru_obs_list | Extract predictor or component index information
bru_info | Methods for bru_info objects
bru_info.bru | Methods for bru_info objects
bru_info.character | Methods for bru_info objects
bru_input | Store and evaluate component inputs
bru_input.bm_collect | Store and evaluate component inputs
bru_input.bm_multi | Store and evaluate component inputs
bru_input.bm_pipe | Store and evaluate component inputs
bru_input.bm_repeat | Store and evaluate component inputs
bru_input.bm_sum | Store and evaluate component inputs
bru_input.bru_comp | Store and evaluate component inputs
bru_input.bru_comp_list | Store and evaluate component inputs
bru_input.bru_input | Store and evaluate component inputs
bru_input.bru_mapper | Store and evaluate component inputs
bru_input.bru_model | Store and evaluate component inputs
bru_input.bru_obs | Store and evaluate component inputs
bru_input.bru_obs_list | Store and evaluate component inputs
bru_inverse_transformation | Transformation tools
bru_is_additive | Check for predictor expression additivity
bru_is_additive.bru_obs | Check for predictor expression additivity
bru_is_additive.bru_obs_list | Check for predictor expression additivity
bru_is_additive.bru_pred_expr | Check for predictor expression additivity
bru_is_additive.call | Check for predictor expression additivity
bru_is_additive.character | Check for predictor expression additivity
bru_is_additive.default | Check for predictor expression additivity
bru_is_additive.expression | Check for predictor expression additivity
bru_is_additive.formula | Check for predictor expression additivity
bru_is_additive.name | Check for predictor expression additivity
bru_is_additive.numeric | Check for predictor expression additivity
bru_is_additive.quosure | Check for predictor expression additivity
bru_is_linear | Check for predictor linearity
bru_is_linear.bru | Check for predictor linearity
bru_is_linear.bru_comp | Check for predictor linearity
bru_is_linear.bru_comp_list | Check for predictor linearity
bru_is_linear.bru_info | Check for predictor linearity
bru_is_linear.bru_mapper | Check for predictor linearity
bru_is_linear.bru_model | Check for predictor linearity
bru_is_linear.bru_obs | Check for predictor linearity
bru_is_linear.bru_obs_list | Check for predictor linearity
bru_is_linear.bru_pred_expr | Check for predictor linearity
bru_is_rowwise | Check for predictor rowwise evaluability
bru_is_rowwise.bru_comp | Check for predictor rowwise evaluability
bru_is_rowwise.bru_comp_list | Check for predictor rowwise evaluability
bru_is_rowwise.bru_mapper | Check for predictor rowwise evaluability
bru_is_rowwise.bru_obs | Check for predictor rowwise evaluability
bru_is_rowwise.bru_obs_list | Check for predictor rowwise evaluability
bru_is_rowwise.bru_pred_expr | Check for predictor rowwise evaluability
bru_like_list | Observation model construction for 'bru()'
bru_log | Access methods for 'bru_log' objects
bru_log.bru | Access methods for 'bru_log' objects
bru_log.bru_log | Access methods for 'bru_log' objects
bru_log.character | Access methods for 'bru_log' objects
bru_log.iinla | Access methods for 'bru_log' objects
bru_log_abort | Add a log message
bru_log_bookmark | Methods for 'bru_log' bookmarks
bru_log_bookmarks | Methods for 'bru_log' bookmarks
bru_log_index | Position methods for 'bru_log' objects
bru_log_message | Add a log message
bru_log_offset | Position methods for 'bru_log' objects
bru_log_reset | Clear log contents
bru_log_warn | Add a log message
bru_mapper | Constructors for 'bru_mapper' objects
bru_mapper.fm_mesh_1d | Mapper for 'fm_mesh_1d'
bru_mapper.fm_mesh_2d | Mapper for general 'fmesher' function space objects
bru_mapper_aggregate | Mapper for aggregation
bru_mapper_collect | Mapper for concatenated variables
bru_mapper_const | Constant mapper
bru_mapper_define | Constructors for 'bru_mapper' objects
bru_mapper_factor | Mapper for factor variables
bru_mapper_fmesher | Mapper for general 'fmesher' function space objects
bru_mapper_generics | Generic methods for bru_mapper objects
bru_mapper_harmonics | Mapper for cos/sin functions
bru_mapper_index | Mapper for indexed variables
bru_mapper_linear | Mapper for a linear effect
bru_mapper_logsumexp | Mapper for log-sum-exp aggregation
bru_mapper_marginal | Mapper for marginal distribution transformation
bru_mapper_matrix | Mapper for matrix multiplication
bru_mapper_multi | Mapper for tensor product domains
bru_mapper_pipe | Mapper for linking several mappers in sequence
bru_mapper_repeat | Mapper for repeating a mapper
bru_mapper_scale | Mapper for element-wise scaling
bru_mapper_shift | Mapper for element-wise shifting
bru_mapper_sum | Mapper for adding multiple mappers
bru_mapper_taylor | Mapper for linear Taylor approximations
bru_model_mapper_methods | Mapper methods for model objects
bru_names | Extract standardised names from a bru or inla result object
bru_names.bru | Extract standardised names from a bru or inla result object
bru_names.inla | Extract standardised names from a bru or inla result object
bru_obs | Observation model construction for 'bru()'
bru_obs_list | Observation model construction for 'bru()'
bru_obs_list.bru_obs | Observation model construction for 'bru()'
bru_obs_list.bru_obs_list | Observation model construction for 'bru()'
bru_obs_list.list | Observation model construction for 'bru()'
bru_options | Create or update an options objects
bru_options_check | Create or update an options objects
bru_options_default | Create or update an options objects
bru_options_get | Create or update an options objects
bru_options_reset | Create or update an options objects
bru_options_set | Create or update an options objects
bru_options_set_local | Create or update an options objects
bru_rerun | Convenient model fitting using (iterated) INLA
bru_response_size | Response size queries
bru_response_size.bru | Response size queries
bru_response_size.bru_info | Response size queries
bru_response_size.bru_model | Response size queries
bru_response_size.bru_obs | Response size queries
bru_response_size.bru_obs_list | Response size queries
bru_response_size.default | Response size queries
bru_response_size.inla.surv | Response size queries
bru_response_size.list | Response size queries
bru_set_missing | Set missing values in observation models
bru_set_missing.bru | Set missing values in observation models
bru_set_missing.bru_info | Set missing values in observation models
bru_set_missing.bru_model | Set missing values in observation models
bru_set_missing.bru_obs | Set missing values in observation models
bru_set_missing.bru_obs_list | Set missing values in observation models
bru_set_missing.data.frame | Set missing values in observation models
bru_set_missing.default | Set missing values in observation models
bru_set_missing.inla.surv | Set missing values in observation models
bru_set_missing<- | Set missing values in observation models
bru_state | Extract model state properties or samples
bru_state.bru | Extract model state properties or samples
bru_state.bru_model | Extract model state properties or samples
bru_state.inla | Extract model state properties or samples
bru_timings | Extract timing information from fitted bru object
bru_timings.bru | Extract timing information from fitted bru object
bru_timings_plot | Plot inlabru iteration timings
bru_transformation | Transformation tools

## -- C --

c.bm_list | Methods for mapper lists
c.bru_comp | Methods for inlabru component lists
c.bru_comp_list | Methods for inlabru component lists
c.bru_log | Access methods for 'bru_log' objects
c.bru_mapper | Methods for mapper lists
c.bru_obs | Observation model construction for 'bru()'
c.bru_obs_list | Observation model construction for 'bru()'
component | Latent model component construction
component_list | Methods for inlabru component lists
countdata1 | 1-Dimensional Homogeneous Poisson example.
countdata2 | 1-Dimensional NonHomogeneous Poisson example.
countdata3a | 1-Dimensional NonHomogeneous Poisson example.
countdata3b | 1-Dimensional NonHomogeneous Poisson example.
cov2_1D | 1-Dimensional NonHomogeneous Poisson example.

## -- D --

deltaIC | Summarise DIC from 'lgcp' estimates.
devel.cvmeasure | Variance and correlations measures for prediction components

## -- E --

eval_spatial | Evaluate spatial covariates
eval_spatial.sf | Evaluate spatial covariates
eval_spatial.SpatialGridDataFrame | Evaluate spatial covariates
eval_spatial.SpatialPixelsDataFrame | Evaluate spatial covariates
eval_spatial.SpatialPolygonsDataFrame | Evaluate spatial covariates
eval_spatial.SpatRaster | Evaluate spatial covariates
eval_spatial.stars | Evaluate spatial covariates
E_nc1 | 1-Dimensional Homogeneous Poisson example.
E_nc2 | 1-Dimensional NonHomogeneous Poisson example.
E_nc3a | 1-Dimensional NonHomogeneous Poisson example.
E_nc3b | 1-Dimensional NonHomogeneous Poisson example.

## -- F --

format.bm_collect | mapper object summaries
format.bm_expr | mapper object summaries
format.bm_list | mapper object summaries
format.bm_multi | mapper object summaries
format.bm_pipe | mapper object summaries
format.bm_reparam | mapper object summaries
format.bm_repeat | mapper object summaries
format.bm_sum | mapper object summaries
format.bru_input | Summarise component inputs
format.bru_log | Access methods for 'bru_log' objects
format.bru_mapper | mapper object summaries

## -- G --

generate.bru | Sampling based on bru posteriors
gg | ggplot2 geomes for inlabru related objects
gg.bru_prediction | Geom for predictions
gg.data.frame | Geom for predictions
gg.fm_mesh_1d | Geom for fm_mesh_1d objects
gg.fm_mesh_2d | Geom for fm_mesh_2d objects
gg.matrix | Geom for matrix
gg.prediction | Geom for predictions
gg.RasterLayer | Geom for RasterLayer objects
gg.sf | Geom helper for sf objects
gg.Spatial | Geoms for sp Spatial objects
gg.SpatialGridDataFrame | Geoms for sp Spatial objects
gg.SpatialLines | Geoms for sp Spatial objects
gg.SpatialPixels | Geoms for sp Spatial objects
gg.SpatialPixelsDataFrame | Geoms for sp Spatial objects
gg.SpatialPoints | Geoms for sp Spatial objects
gg.SpatialPolygons | Geoms for sp Spatial objects
gg.SpatRaster | Geom wrapper for SpatRaster objects
glance.bru | Glance at a bru model fit
globe | Render objects using RGL
glplot | Render objects using RGL
glplot.fm_mesh_2d | Render objects using RGL
glplot.SpatialLines | Render objects using RGL
glplot.SpatialPoints | Render objects using RGL
gorillas_sf | Gorilla nesting sites in sf format
gorillas_sf_gcov | Gorilla nesting sites in sf format
gorillas_sp | Gorilla nesting sites in sf format

## -- I --

ibm_as_taylor | Compute a mapper linearisation
ibm_as_taylor.bm_collect | Compute a mapper linearisation
ibm_as_taylor.bm_expr | Compute a mapper linearisation
ibm_as_taylor.bm_list | Mapper methods for model objects
ibm_as_taylor.bm_multi | Compute a mapper linearisation
ibm_as_taylor.bm_repeat | Compute a mapper linearisation
ibm_as_taylor.bm_sum | Compute a mapper linearisation
ibm_as_taylor.bru_comp | Compute a mapper linearisation
ibm_as_taylor.bru_comp_list | Mapper methods for model objects
ibm_as_taylor.bru_model | Mapper methods for model objects
ibm_as_taylor.bru_obs | Compute a mapper linearisation
ibm_as_taylor.bru_obs_list | Compute a mapper linearisation
ibm_as_taylor.default | Compute a mapper linearisation
ibm_eval | Evaluate a mapping
ibm_eval.bm_aggregate | Specific 'ibm_eval' method implementations
ibm_eval.bm_collect | Specific 'ibm_eval' method implementations
ibm_eval.bm_const | Specific 'ibm_eval' method implementations
ibm_eval.bm_expr | Specific 'ibm_eval' method implementations
ibm_eval.bm_list | Mapper methods for model objects
ibm_eval.bm_logitaverage | Specific 'ibm_eval' method implementations
ibm_eval.bm_logsumexp | Specific 'ibm_eval' method implementations
ibm_eval.bm_marginal | Specific 'ibm_eval' method implementations
ibm_eval.bm_multi | Specific 'ibm_eval' method implementations
ibm_eval.bm_pipe | Specific 'ibm_eval' method implementations
ibm_eval.bm_reparam | Specific 'ibm_eval' method implementations
ibm_eval.bm_repeat | Specific 'ibm_eval' method implementations
ibm_eval.bm_scale | Specific 'ibm_eval' method implementations
ibm_eval.bm_shift | Specific 'ibm_eval' method implementations
ibm_eval.bm_sum | Specific 'ibm_eval' method implementations
ibm_eval.bm_taylor | Specific 'ibm_eval' method implementations
ibm_eval.bru_comp | Mapper methods for model objects
ibm_eval.bru_comp_list | Mapper methods for model objects
ibm_eval.bru_model | Mapper methods for model objects
ibm_eval.bru_obs | Evaluate a mapping
ibm_eval.bru_obs_list | Evaluate a mapping
ibm_eval.default | Evaluate a mapping
ibm_eval2 | Evaluate a mapper and its Jacobian
ibm_eval2.bm_expr | Evaluate a mapper and its Jacobian
ibm_eval2.bm_list | Mapper methods for model objects
ibm_eval2.bm_pipe | Evaluate a mapper and its Jacobian
ibm_eval2.bru_model | Mapper methods for model objects
ibm_eval2.bru_obs | Evaluate a mapper and its Jacobian
ibm_eval2.bru_obs_list | Evaluate a mapper and its Jacobian
ibm_eval2.default | Evaluate a mapper and its Jacobian
ibm_eval_methods | Specific 'ibm_eval' method implementations
ibm_inla_subset | Find index subset of INLA visible states
ibm_inla_subset.default | Find index subset of INLA visible states
ibm_input | Interface between 'bru_input' and 'bru_mapper'
ibm_input_available | Interface between 'bru_input' and 'bru_mapper'
ibm_input_get | Interface between 'bru_input' and 'bru_mapper'
ibm_input_new | Interface between 'bru_input' and 'bru_mapper'
ibm_input_set | Interface between 'bru_input' and 'bru_mapper'
ibm_invalid_output | Detect invalid input to a mapper
ibm_invalid_output.bm_collect | Detect invalid input to a mapper
ibm_invalid_output.bm_index | Detect invalid input to a mapper
ibm_invalid_output.bm_multi | Detect invalid input to a mapper
ibm_invalid_output.bm_repeat | Detect invalid input to a mapper
ibm_invalid_output.bm_sum | Detect invalid input to a mapper
ibm_invalid_output.default | Detect invalid input to a mapper
ibm_is_linear | Check if a mapper is linear/affine
ibm_is_linear.bm_collect | Check if a mapper is linear/affine
ibm_is_linear.bm_expr | Check if a mapper is linear/affine
ibm_is_linear.bm_multi | Check if a mapper is linear/affine
ibm_is_linear.bm_sum | Check if a mapper is linear/affine
ibm_is_linear.default | Check if a mapper is linear/affine
ibm_is_rowwise | Check if a mapper is rowwise
ibm_is_rowwise.default | Check if a mapper is rowwise
ibm_jacobian | Jacobian of a mapper
ibm_jacobian.bm_aggregate | Jacobian of a mapper
ibm_jacobian.bm_collect | Jacobian of a mapper
ibm_jacobian.bm_const | Jacobian of a mapper
ibm_jacobian.bm_expr | Jacobian of a mapper
ibm_jacobian.bm_factor | Jacobian of a mapper
ibm_jacobian.bm_fmesher | Jacobian of a mapper
ibm_jacobian.bm_fm_mesh_1d | Jacobian of a mapper
ibm_jacobian.bm_harmonics | Jacobian of a mapper
ibm_jacobian.bm_index | Jacobian of a mapper
ibm_jacobian.bm_linear | Jacobian of a mapper
ibm_jacobian.bm_list | Mapper methods for model objects
ibm_jacobian.bm_logitaverage | Jacobian of a mapper
ibm_jacobian.bm_logsumexp | Jacobian of a mapper
ibm_jacobian.bm_marginal | Jacobian of a mapper
ibm_jacobian.bm_matrix | Jacobian of a mapper
ibm_jacobian.bm_multi | Jacobian of a mapper
ibm_jacobian.bm_pipe | Jacobian of a mapper
ibm_jacobian.bm_reparam | Jacobian of a mapper
ibm_jacobian.bm_repeat | Jacobian of a mapper
ibm_jacobian.bm_scale | Jacobian of a mapper
ibm_jacobian.bm_shift | Jacobian of a mapper
ibm_jacobian.bm_sum | Jacobian of a mapper
ibm_jacobian.bm_taylor | Jacobian of a mapper
ibm_jacobian.bru_model | Mapper methods for model objects
ibm_jacobian.bru_obs | Jacobian of a mapper
ibm_jacobian.bru_obs_list | Jacobian of a mapper
ibm_jacobian.default | Jacobian of a mapper
ibm_n | Size of the latent vector of a mapping
ibm_n.bm_aggregate | Size of the latent vector of a mapping
ibm_n.bm_collect | Size of the latent vector of a mapping
ibm_n.bm_const | Size of the latent vector of a mapping
ibm_n.bm_expr | Size of the latent vector of a mapping
ibm_n.bm_factor | Size of the latent vector of a mapping
ibm_n.bm_fmesher | Size of the latent vector of a mapping
ibm_n.bm_fm_mesh_1d | Size of the latent vector of a mapping
ibm_n.bm_harmonics | Size of the latent vector of a mapping
ibm_n.bm_linear | Size of the latent vector of a mapping
ibm_n.bm_marginal | Size of the latent vector of a mapping
ibm_n.bm_matrix | Size of the latent vector of a mapping
ibm_n.bm_multi | Size of the latent vector of a mapping
ibm_n.bm_pipe | Size of the latent vector of a mapping
ibm_n.bm_reparam | Size of the latent vector of a mapping
ibm_n.bm_repeat | Size of the latent vector of a mapping
ibm_n.bm_scale | Size of the latent vector of a mapping
ibm_n.bm_shift | Size of the latent vector of a mapping
ibm_n.bm_sum | Size of the latent vector of a mapping
ibm_n.bm_taylor | Size of the latent vector of a mapping
ibm_n.default | Size of the latent vector of a mapping
ibm_names | Names of submapper
ibm_names.bm_collect | Names of submapper
ibm_names.bm_multi | Names of submapper
ibm_names.bm_sum | Names of submapper
ibm_names.default | Names of submapper
ibm_names<- | Names of submapper
ibm_names<-.bm_collect | Names of submapper
ibm_names<-.bm_multi | Names of submapper
ibm_names<-.bm_sum | Names of submapper
ibm_names<-.bru_mapper_collect | Names of submapper
ibm_names<-.bru_mapper_multi | Names of submapper
ibm_names<-.bru_mapper_sum | Names of submapper
ibm_n_output | Output size of a mapping
ibm_n_output.bm_aggregate | Output size of a mapping
ibm_n_output.bm_collect | Output size of a mapping
ibm_n_output.bm_expr | Output size of a mapping
ibm_n_output.bm_marginal | Output size of a mapping
ibm_n_output.bm_multi | Output size of a mapping
ibm_n_output.bm_pipe | Output size of a mapping
ibm_n_output.bm_reparam | Output size of a mapping
ibm_n_output.bm_repeat | Output size of a mapping
ibm_n_output.bm_scale | Output size of a mapping
ibm_n_output.bm_shift | Output size of a mapping
ibm_n_output.bm_sum | Output size of a mapping
ibm_n_output.bm_taylor | Output size of a mapping
ibm_n_output.default | Output size of a mapping
ibm_simplify | Simplify a mapper
ibm_simplify.bm_list | Mapper methods for model objects
ibm_simplify.bm_pipe | Simplify a mapper
ibm_simplify.bru_comp | Mapper methods for model objects
ibm_simplify.bru_comp_list | Mapper methods for model objects
ibm_simplify.bru_model | Mapper methods for model objects
ibm_simplify.default | Simplify a mapper
ibm_values | Value vector for a mapping
ibm_values.bm_aggregate | Value vector for a mapping
ibm_values.bm_collect | Value vector for a mapping
ibm_values.bm_const | Value vector for a mapping
ibm_values.bm_expr | Value vector for a mapping
ibm_values.bm_factor | Value vector for a mapping
ibm_values.bm_fmesher | Value vector for a mapping
ibm_values.bm_fm_mesh_1d | Value vector for a mapping
ibm_values.bm_linear | Value vector for a mapping
ibm_values.bm_marginal | Value vector for a mapping
ibm_values.bm_matrix | Value vector for a mapping
ibm_values.bm_multi | Value vector for a mapping
ibm_values.bm_pipe | Value vector for a mapping
ibm_values.bm_reparam | Value vector for a mapping
ibm_values.bm_repeat | Value vector for a mapping
ibm_values.bm_scale | Value vector for a mapping
ibm_values.bm_shift | Value vector for a mapping
ibm_values.bm_sum | Value vector for a mapping
ibm_values.bm_taylor | Value vector for a mapping
ibm_values.default | Value vector for a mapping
index_eval | Extract predictor or component index information
inlabru | inlabru

## -- L --

lambda1_1D | 1-Dimensional Homogeneous Poisson example.
lambda2_1D | 1-Dimensional NonHomogeneous Poisson example.
lambda3_1D | 1-Dimensional NonHomogeneous Poisson example.
length.bru_log | Access methods for 'bru_log' objects
lgcp | Log Gaussian Cox process (LGCP) inference using INLA
like | Observation model construction for 'bru()'
like_list | Observation model construction for 'bru()'

## -- M --

mexdolphin_sf | Pan-tropical spotted dolphins in the Gulf of Mexico
mexdolphin_sp | Pan-tropical spotted dolphins in the Gulf of Mexico
mrsea | Marine renewables strategic environmental assessment
multiplot | Multiple ggplots on a page.

## -- N --

new_bru_input | Store and evaluate component inputs
new_bru_log | Create a 'bru_log' object

## -- P --

plot.bru | Plot method for posterior marginals estimated by bru
plot.bru_prediction | Geom for predictions
plot.prediction | Geom for predictions
plotmarginal.inla | Plot method for posterior marginals estimated by bru
plotsample | Create a plot sample.
point2count | Convert a plot sample of points into one of counts.
Poisson1_1D | 1-Dimensional Homogeneous Poisson example.
Poisson2_1D | 1-Dimensional NonHomogeneous Poisson example.
Poisson3_1D | 1-Dimensional NonHomogeneous Poisson example.
predict.bru | Prediction from fitted bru model
print.bm_list | mapper object summaries
print.bru | Convenient model fitting using (iterated) INLA
print.bru_info | Methods for bru_info objects
print.bru_input | Summarise component inputs
print.bru_log | Access methods for 'bru_log' objects
print.bru_mapper | mapper object summaries
print.bru_obs | Summary and print methods for observation models
print.bru_obs_list | Summary and print methods for observation models
print.summary_bru | Convenient model fitting using (iterated) INLA
print.summary_bru_info | Methods for bru_info objects
print.summary_bru_mapper | mapper object summaries
print.summary_bru_obs | Summary and print methods for observation models
print.summary_bru_obs_list | Summary and print methods for observation models
print.summary_bru_options | Print inlabru options
pts1 | 1-Dimensional Homogeneous Poisson example.
pts2 | 1-Dimensional NonHomogeneous Poisson example.
pts3 | 1-Dimensional NonHomogeneous Poisson example.

## -- R --

robins_subset | robins_subset

## -- S --

sample.lgcp | Sample from an inhomogeneous Poisson process
shrimp | Blue and red shrimp in the Western Mediterranean Sea
spde.posterior | Posteriors of SPDE hyper parameters and Matern correlation or covariance function.
summary.bru | Convenient model fitting using (iterated) INLA
summary.bru_info | Methods for bru_info objects
summary.bru_input | Summarise component inputs
summary.bru_mapper | mapper object summaries
summary.bru_obs | Summary and print methods for observation models
summary.bru_obs_list | Summary and print methods for observation models
summary.bru_options | Print inlabru options

## -- T --

tidy.bru | Extract a bru model fit into a tidy tibble
toygroups | Simulated 1D animal group locations and group sizes
toypoints | Simulated 2D point process data

## -- misc --

[.bm_collect | Mapper for concatenated variables
[.bm_list | Methods for mapper lists
[.bm_multi | Mapper for tensor product domains
[.bm_sum | Mapper for adding multiple mappers
[.bru_comp_list | Methods for inlabru component lists
[.bru_log | Access methods for 'bru_log' objects
[.bru_mapper_collect | Mapper for concatenated variables
[.bru_mapper_multi | Mapper for tensor product domains
[.bru_mapper_sum | Mapper for adding multiple mappers
[.bru_obs_list | Observation model construction for 'bru()'