# Time Series Analysis Tool using Linear Layered SDEs

## Documentation for package ‘layeranalyzer’ version 0.4.1

- DESCRIPTION file.
- Package NEWS.

## Help Pages

anova.layered | Analysis of Deviance for return object from 'layer.analyzer'.
bi.lext | A dataset of reed warbler body mass over several years.
br.lext | A dataset of reed warbler body mass over several years.
br.lorig | A dataset of reed warbler body mass over several years.
compare.layered | Perform comparison of several models for the same dataset(s).
hare.norm | A dataset of hare catchment data from the Hudson Bay Company.
hare.orig | A dataset of hare catchment data from the Hudson Bay Company.
layer.analyzer | Time series analysis tool using linear layered SDEs.
layer.analyzer.timeseries.list | Time series analysis tool using linear layered SDEs.
layer.connections | Alternative connection specification, taking a structure list.
layer.connections.list | Alternative connection specification, taking a structure list.
layer.data.series | Represents a measurement time series.
layer.load.prior | Reading prior specification for the layer.analyzer from a file.
layer.pairs | Alternative connection specification, taking a structure list.
layer.pairs.list | Alternative connection specification, taking a structure list.
layer.param.loglik | Returning log-likelihood for a set of parameter values.
layer.param.logliks | Returning log-likelihoods for a set of parameter value sets.
layer.predict.estimate | Prediction based on previously performed analysis using single point estimate for the parameter set
layer.predict.mcmc | Prediction based on previously performed MCMC analysis
layer.predict.mcmc.list | Prediction based on previously performed MCMC analysis
layer.prior | Specifying a prior distribution for the layer.analyzer.
layer.series.structure | Represents a measurement time series.
layer.standard.log.prior | Specifying a suggestion for prior distribution, for data that will be log-transformed.
layer.standard.prior | Specifying a default prior distribution for the layer.analyzer.
layer.struct.name | Generate a description of the process structure of a time series.
layer.wide.prior | Specifying a suggestion for a wide (little information) prior distribution.
layeranalyzer | Time Series Analysis Tool using Linear Layered SDEs
logLik.layered | Return maximum likelihood on the logarithmic scale for return object from 'layer.analyzer'.
lrate.pr | A "layer.prior" object used for diversifications rate analysis.
lynx.norm | A dataset of lynx catchment data from the Hudson Bay Company.
lynx.orig | A dataset of lynx catchment data from the Hudson Bay Company.
malta | A dataset of reed warbler body mass over several years.
n.combinations | Returns all ways of combining 'n' objects going form 0 to <base>.
nobs.layered | Return number of observations for return object from 'layer.analyzer'.
print.layer.series.structure | Outputs the description of a 'layer'series'structure' object.
print.summary.layered | Summarizes the return object from 'layer.analyzer'.
read.layer.data.series | Read a series representing a measurement time series.
stepwise.connections.layered | Time series analysis tool using linear layered SDEs.
summary.layered | Summarizes the return object from 'layer.analyzer'.
traverse.connections.layered | Time series analysis tool using linear layered SDEs.
traverse.standalone.layered | Model traversal tool for standalone time series.