Hierarchy-Aware, Interactively Editable Color Palettes for
Clusters
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Documentation for package ‘palettome’ version 1.0.1
Help Pages
| as_cluster_data | Build a palettome data object from a data frame or Seurat object |
| as_cluster_data.data.frame | Build a palettome data object from a data frame or Seurat object |
| as_cluster_data.Seurat | Build a palettome data object from a data frame or Seurat object |
| cluster_colors | Get cluster colors as a named vector or a plain data frame |
| color_distance | Pairwise perceptual color distance |
| compute_centroids | Compute per-cluster centroids and cell counts |
| compute_family_dendrogram | Build a cluster-distance dendrogram for family detection |
| cut_families | Cut a precomputed dendrogram into families |
| detect_families | Detect (or pass through) cluster families |
| downsample_stratified | Stratified per-cluster subsample for interactive preview |
| export_palette_csv | Export cluster and/or family color tables as CSV |
| export_palette_json | Export a palette session to JSON |
| family_colors | Get family colors as a named vector or a plain data frame |
| generate_palette | Generate a cluster/family color palette |
| import_palette_json | Import a palette session from JSON |
| launch_palettome_ui | Launch the interactive Palettome Shiny UI |
| optimize_color | Snap a hand-picked color into the palette's aesthetic envelope |
| plot_dendrogram | Plot a dendrogram preview of detected families |
| plot_palette_static | Static plot of an embedding colored by the current palette |
| plot_swatches | Standalone swatch/legend figure, grouped by family |
| reset_overrides | Reset manual color overrides |
| set_manual_color | Manually set a cluster's or family's color |
| simulate_cvd | Simulate color-vision deficiency on a palette |