# Modeling Species Distributions in Three Dimensions

## Documentation for package ‘voluModel’ version 0.2.5

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

bottomRaster | Bottom raster generation
centerPointRasterTemplate | Center Point Raster Template
cleanDepth | Clean and flag coordinates based on intersection with a land polygon, intersection with a bathymetry layer, and/or by a given depth range
depthMatch | Match the depth values given in an occurrence dataset to the depth slice values of a user provided spatRaster stack
diversityStack | Diversity stack
downsample | Occurrence downsampling
env_stack_transform | Coverts a list of 'SpatRaster' stacks where the elements are environmental variables and the layers are depths to a list of SpatRaster stacks where the elements are depths and the layers are environmental variables
interpolateRaster | Interpolate patchily sampled rasters
marineBackground | Marine background shapefile generation
maxent_3D | Create 3D Ecological Niche Models with Maxent
MESS3D | Calculate MESS
mSampling2D | 2D background sampling
mSampling3D | 3D background sampling
oneRasterPlot | Single raster plot
partition_3D | Create 3D partitions
plotLayers | Plotting 3D model in 2D
pointCompMap | Comparative point mapping
pointMap | Point mapping
rasterComp | Comparative raster mapping
smoothRaster | Smooth rasters
threshold_3D | Test different threshold levels and produce presence/absence layers for 3D models
transectPlot | Plot vertical sample
xyzSample | Sampling from a 'SpatRaster' vector using 3D coordinates