Import Data from EDC Software

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Documentation for package ‘EDCimport’ version 0.5.1

• DESCRIPTION file.
• Package NEWS.

Help Pages

assert_no_duplicate	Assert that a dataframe has one row per patient
assert_no_rows	Standardized warning system
build_lookup	Generate a lookup table
check_subjid	Check the validity of the subject ID column
crf_status_plot	Show the current CRF status distribution
data_example	Example databases
edc_browse_excel	Save the database as an Excel file
edc_data_stop	Standardized warning system
edc_data_warn	Standardized warning system
edc_data_warnings	Standardized warning system
edc_db_to_excel	Save the database as an Excel file
edc_example	Example databases
edc_example_ae	Example databases
edc_example_mixed	Example databases
edc_example_plot	Example databases
edc_inform_code	Shows how many code you wrote
edc_lookup	Retrieve the lookup table from options
edc_options	Set global options for 'EDCimport'
edc_pal_crf	Show the current CRF status distribution
edc_peek_options	See which 'EDCimport' option is currently set.
edc_population_plot	Plot the populations
edc_reset_options	Reset all 'EDCimport' options.
edc_swimmerplot	Swimmer plot of all dates columns
edc_warn_extraction_date	Warn if extraction is too old
edc_warn_patient_diffs	Check the validity of the subject ID column
extend_lookup	Extend the lookup table
fct_yesno	Format factor levels as Yes/No
find_keyword	Find a keyword in the whole database
get_common_cols	Get columns that are common to multiple datasets
get_crfname_cols	Get key column names
get_datasets	Retrieve the datasets as a list of data.frames
get_key_cols	Important column names
get_lookup	Retrieve the lookup table from options
get_meta_cols	Get columns shared by most datasets
get_subjid_cols	Get key column names
harmonize_subjid	Harmonize the subject ID of the database
lastnews_table	Get a table with the latest date for each patient
load_as_list	Load a '.RData' file as a list
load_list	Load a list in an environment
manual_correction	Manual correction
read_all_csv	Read all '.csv' files in a directory
read_all_sas	Read all '.sas7bdat' files in a directory
read_all_xpt	Read all '.xpt' files in a directory
read_tm_all_xpt	Read all '.xpt' files in a directory
read_trialmaster	Read the '.zip' archive of a TrialMaster export
reset_manual_correction	Manual correction
save_list	Save a list as '.RData' file
save_plotly	Save a plotly to an HTML file
save_sessioninfo	Save 'sessionInfo()' output
search_for_newer_data	Search for newer data
select_distinct	Select only distinct columns
split_mixed_datasets	Split mixed datasets
summary.common_cols	Get columns that are common to multiple datasets
table_format	Identify if a dataframe has a long or a wide format
unify	Unify a vector