| convert_id |
Convert Gene Symbols to ENTREZ IDs |
| filter_drugs |
Re-rank drugs based on the number of targets |
| get_drugs |
Get Drugs associated with the differential expression profile |
| get_pert_by_type |
Filter the drug based on the tested cell-line |
| parse_perts |
Parse the perturbagens to find out their frequency of occurrence. |
| plot_activities |
Visualise the number of perturbagens and the top activities |
| prepare_ids |
Prepare IDs for CMAP Search |
| read_id |
Read Gene Symbols from CSV file into up and down regulated lists |
| run_pipeline |
Run the main pipeline for getting drugs from differentail expression profile |
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