RNifti Fast R and C++ Access to NIfTI Images

Public Types | Public Member Functions | Static Public Member Functions | Protected Member Functions | Protected Attributes | List of all members
RNifti::SquareMatrix< NiftiType, ElementType, Order > Class Template Reference

Class representing a numeric square matrix of a fixed order. More...

`#include <NiftiImage.h>`

## Public Types
typedef NiftiType | NativeType
| The niftilib structure type corresponding to this matrix.
typedef SquareMatrix< NiftiType, ElementType, Order > | MatrixType
| Type alias for the current specialisation.
typedef Vector< ElementType, Order > | VectorType
| Type of vectors for which this matrix is a linear operator.

## Public Member Functions
| SquareMatrix (const ElementType value=0.0)
| Initialise with a fixed element value, defaulting to zero.
| SquareMatrix (const ElementType *source)
| Initialise from a C-style array of the appropriate type and length.
| SquareMatrix (const NiftiType &source)
| Initialise from the appropriate niftilib type.
| SquareMatrix (SEXP source)
| Initialise from an R object representing a numeric matrix.
| operator const NiftiType () const
| Implicit conversion to the corresponding niftilib type, which allows a `SquareMatrix` object to be used directly in library functions.
| operator NiftiType ()
| Implicit conversion to the corresponding niftilib type, which allows a `SquareMatrix` object to be used directly in library functions.
const ElementType * | begin () const
| Return a pointer/iterator to the beginning of the data.
ElementType * | begin ()
| Return a pointer/iterator to the beginning of the data.
const ElementType * | end () const
| Return a pointer/iterator to the end of the data.
ElementType * | end ()
| Return a pointer/iterator to the end of the data.
MatrixType | inverse () const
| Matrix inverse.
MatrixType | polar () const
| Polar decomposition, as implemented in niftilib (`Order` 3 only)
ElementType | colnorm () const
| Maximum column norm, as implemented in niftilib (`Order` 3 only)
ElementType | rownorm () const
| Maximum row norm, as implemented in niftilib (`Order` 3 only)
ElementType | determ () const
| Matrix determinant, as implemented in niftilib (`Order` 3 only)
MatrixType | multiply (const MatrixType &other) const
| Matrix-matrix multiplication.
VectorType | multiply (const VectorType &vec) const
| Matrix-vector multiplication.
MatrixType | operator* (const MatrixType &other) const
| Matrix-matrix multiplication (infix shorthand)
VectorType | operator* (const VectorType &vec) const
| Matrix-vector multiplication (infix shorthand)
const ElementType & | operator() (const int i, const int j) const
| Indexing operator.
ElementType & | operator() (const int i, const int j)
| Indexing operator.
| operator SEXP () const
| `SEXP` cast operator, which converts to R's numeric matrix type

## Static Public Member Functions
static MatrixType | eye ()
| Construct an identity matrix of the appropriate size.

## Protected Member Functions
NiftiType * | niftiPointer () const
| Obtain a pointer to a NIfTI-style `mat44` or `dmat44` encapsulating the same data as this object.
NiftiType | niftiCopy () const
| Copy the data elements into a new NIfTI-style `mat44` or `dmat44`.

## Protected Attributes
ElementType | elements [Order *Order]
| The underlying raw data elements, stored row-major for consistency with niftilib.

## Detailed Description

template<class NiftiType, typename ElementType, int Order>
class RNifti::SquareMatrix< NiftiType, ElementType, Order >

Class representing a numeric square matrix of a fixed order.

Provides object-based encapsulation and version agnosticism for certain NIfTI-relevant matrix operations, as well as other conveniences such as iterators and conversion to/from R matrices.

Author
  Jon Clayden (code@.nosp@m.clay.nosp@m.den.o.nosp@m.rg)

## Member Function Documentation

## ◆ begin() [1/2]

template<class NiftiType, typename ElementType, int Order>

ElementType * RNifti::SquareMatrix< NiftiType, ElementType, Order >::begin | ( |  | ) |
| inline

Return a pointer/iterator to the beginning of the data.

Elements are accessed in row-major order

## ◆ begin() [2/2]

template<class NiftiType, typename ElementType, int Order>

const ElementType * RNifti::SquareMatrix< NiftiType, ElementType, Order >::begin | ( |  | ) | const
| inline

Return a pointer/iterator to the beginning of the data.

Elements are accessed in row-major order

## ◆ operator()() [1/2]

template<class NiftiType, typename ElementType, int Order>

ElementType & RNifti::SquareMatrix< NiftiType, ElementType, Order >::operator() | ( | const int | i,
|  | const int | j )
| inline

Indexing operator.

The first index is for column, and the second is for row

## ◆ operator()() [2/2]

template<class NiftiType, typename ElementType, int Order>

const ElementType & RNifti::SquareMatrix< NiftiType, ElementType, Order >::operator() | ( | const int | i,
|  | const int | j ) const
| inline

Indexing operator.

The first index is for column, and the second is for row

The documentation for this class was generated from the following file:

- inst/include/RNifti/NiftiImage.h