Semi-Parametric Joint Modeling of Longitudinal and Survival Data

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Documentation for package ‘FastJM’ version 1.7.2

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cdata Simulated competing risks data correlated with ydata
cdatah Simulated competing risks data where event hazards depend on within-subject variance
coef Extract parameter estimates from fitted joint models
coef.jmcs Extract parameter estimates from fitted joint models
coef.JMMLSM Extract parameter estimates from fitted joint models
coef.mvjmcs Extract parameter estimates from fitted joint models
combine_biomarkers Combine biomarker measurements across multiple data frames
Concordance Concordance for joint models
DynPredAcc Dynamic prediction accuracy metrics for joint models
fitted Fitted values for joint models
fitted.jmcs Fitted values for joint models
fixef Extract fixed effects estimates from joint models
jmcs Joint modeling of longitudinal continuous data and competing risks
jmcs_control Control options for jmcs
JMMLSM Joint modeling of longitudinal means, within-subject variability, and survival
JMMLSM_control Control options for JMMLSM
logLik Extract log-likelihoods from fitted joint models
logLik.jmcs Extract log-likelihoods from fitted joint models
logLik.JMMLSM Extract log-likelihoods from fitted joint models
logLik.mvjmcs Extract log-likelihoods from fitted joint models
mvcdata Simulated competing risks data correlated with mvydata
mvjmcs Joint modeling of multivariate longitudinal and competing risks data
mvjmcs_control Control options for mvjmcs
mvydata Simulated bivariate longitudinal data
plot.jmcs Diagnostic plots for fitted jmcs models
plot.survfit Plot dynamic predictions from joint models
plot.survfitjmcs Plot dynamic predictions from joint models
plot.survfitJMMLSM Plot dynamic predictions from joint models
plot.survfitmvjmcs Plot dynamic predictions from joint models
print Print fitted joint models
print.jmcs Print fitted joint models
print.JMMLSM Print fitted joint models
print.mvjmcs Print fitted joint models
print.survfit Print dynamic predictions from joint models
print.survfitjmcs Print dynamic predictions from joint models
print.survfitJMMLSM Print dynamic predictions from joint models
print.survfitmvjmcs Print dynamic predictions from joint models
ranef Random effects estimates for joint models
residuals Residuals for joint models
residuals.jmcs Residuals for joint models
simJMdata Simulate single-biomarker joint model data
simJMWSVdata Simulate joint model data with heterogeneous within-subject variability
simmvJMdata Simulate multivariate longitudinal and competing risks data
simmvJMdatalm Data simulation for multivariate joint models conditional on a landmark time
summary Summarize fitted joint models
summary.Concordance Summarize concordance estimates
summary.DynPredAcc Summarize dynamic prediction accuracy
summary.jmcs Summarize fitted joint models
summary.JMMLSM Summarize fitted joint models
summary.mvjmcs Summarize fitted joint models
survfitJM Dynamic predictions from fitted joint models
survfitJM.jmcs Dynamic predictions from fitted joint models
survfitJM.JMMLSM Dynamic predictions from fitted joint models
survfitJM.mvjmcs Dynamic predictions from fitted joint models
timeplot Diagnostic plots for the fitted joint model
vcov Extract variance-covariance matrices from fitted joint models
vcov.jmcs Extract variance-covariance matrices from fitted joint models
vcov.JMMLSM Extract variance-covariance matrices from fitted joint models
vcov.mvjmcs Extract variance-covariance matrices from fitted joint models
ydata Simulated longitudinal data
ydatah Simulated longitudinal data with within-subject variance