MDaRes-package	MDaRes-package
add_active_site	add_active_site
add_binding_site	add_binding_site
add_disulfide_bond	add_disulfide_bond
add_domain	add_domain
add_glycosilation	add_glycosilation
add_lipidation	add_lipidation
add_location	add_location
add_modified_residue	add_modified_residue
add_molecule_processing	add_molecule_processing
add_motive	add_motive
add_secondary_structure	add_secondary_structure
add_uniprot_annotation	add_uniprot_annotation
add_variants	add_variants
build_SA_matrix	build_SA_matrix
colnames_substring	colnames_substring
create_annotation_df	create_annotation_df
do_freq_diff_plot	do_freq_diff_plot
do_freq_plot	do_freq_plot
do_MI_plot	do_MI_plot
do_shannon_entropy_diff_plot	do_shannon_entropy_diff_plot
do_shannon_entropy_plot	do_shannon_entropy_plot
entropy_visualization	entropy_visualization
freq_diff_plot	freq_diff_plot
freq_plot	freq_plot
generate_fragment_colnames	generate_fragment_colnames
get_res_numbering	get_res_numbering
import_SA	import_SA
MDaRes	MDaRes-package
MImat	MImat
MI_plot	MI_plot
MI_ranking_couple	MI_ranking_couple
MI_ranking_median	MI_ranking_median
nMImat	nMImat
pdb_chain_trim	pdb_chain_trim
read_pdb_cif	read_pdb_cif
SA_encoding	SA_encoding
shannon_entropy	shannon_entropy
shannon_entropy_diff_plot	shannon_entropy_diff_plot
shannon_entropy_plot	shannon_entropy_plot
shannon_ranking	shannon_ranking
total_ranking	total_ranking
xyz_matrix_to_vector	xyz_matrix_to_vector
