cf16bec4fc016e9dab0adc1403bb076161ad88ef00f3c2de536f69931f04d5d5 11851 COPYRIGHT
ac62c95064c8a163a5a9033641151706e656ef4bed05eea41e31c9c2c1eb29ef 4546 DESCRIPTION
f23fae8f68682886c75bc97d1cc05d6e9546ebcdb3c1d70767e3fc98b0ca7929 15192 duckhts_extension/ancestry_sql.c
5b9c749bebcffc8c753dd6b703bfeece617596f926b2a7c63c130c0efafb258b 40171 duckhts_extension/bam_bed_coverage.c
a43284c4704ff531d07363fbd05cb5b9d6113c18379e6a579c7bb65f3ec13bf4 56104 duckhts_extension/bam_bin_counts.c
e1ba93a38735a6ab7de03d09e6e6c9b30dcde6ad44c8fc0084314b179edf4d87 18525 duckhts_extension/bam_insert_size_counts.c
f3903c7eac213fdc6745e8e8a55f40056fcf186ce49b845f1c5d2c1c91151bc8 39603 duckhts_extension/bam_mate_overlap_counts.c
5b4afbafebc187522d914e59f1ef602c48e9340740fa14c804ef57b90cad3a4f 34030 duckhts_extension/bam_mismatch_counts.c
7804ffc19ee5742c3e9a31c838442461b08810ec332ac8cee9369e6ba65f8c5e 12493 duckhts_extension/bam_pileup.c
048de8ef585cf40b5bd11204feaa24fa86ea15141e3898b9ae620bc6acee32f7 67499 duckhts_extension/bam_reader.c
ea2ecb303635140379ac0af3290de37f0766b55d6d442ff89ab8e31d721d706d 11811 duckhts_extension/bam_site_counts.c
f470d97a62f34253dfecddda6679aebdca1a0dc3d401c6734b6092b2094c30da 5216 duckhts_extension/bcf_field_vector.c
88e1d2476971925abe026bbdd3546ca8952017fb96284eb1d8d83a159de8edf9 1607 duckhts_extension/bcf_filter_vector.c
82a10d3e42ac306370e87a9a2786de79a1871ccebe7d36304f3f66c8c78d7fd8 3593 duckhts_extension/bcf_format.c
6875470b28b9d0c2e7e2f01ac2f72bb1cadafe3e3f562efe47241b539b7801ed 5126 duckhts_extension/bcf_genotypes.c
f8baded14ac1eaa116fba9f1cf00e0e0727d4414499a56ee6bbf7e5eb3062617 90677 duckhts_extension/bcf_reader.c
d040ad9bb3649923800e19c6c5cfd814c652e569bfdf3d54782fabaa70fedeb4 24046 duckhts_extension/bcf_scan.c
bb60af255406b73bc7d0b62738525e42076fb0b196039a5f32edbef95ca71c68 178369 duckhts_extension/bcftools_filter.c
22b3e9dc96d27e3a0e70de5f666f8c465345308c1fb907c1e2cc92e8a7c6b86e 44017 duckhts_extension/bcftools_norm_udf.c
ee43b664fa1417b089fe19ef0a5c616220cd0352ca0119faf425ad87d938ddd3 1500 duckhts_extension/bed_line.c
c478b6bbeb82582b3ad83f1736386a695034dc72658c92781460c51843dbc609 14085 duckhts_extension/bgzip.c
86efd874c18c81667a94ad0621a5ca19761483fc349eed92d9b11244e9e5a0da 20972 duckhts_extension/bigwig_reader.c
500d7eea08fe3494192311d8010501dc32b3723c6f8eb7cd1c1e0f6b77218fd9 1208038 duckhts_extension/build/duckhts.duckdb_extension
345f9e0d35e9acd0fc0ac549ad94753a11462cc92e74b2cc0f30da53c64f06d6 67966 duckhts_extension/cgranges_api.c
12cfa77626a31d290251c97b02651818c0e60b44175f5cd018c54e054415de91 8536 duckhts_extension/cgranges.c
dbdab33bcffb488304e7413da6a60580c7736324096322d396a477ffed6f2079 16602 duckhts_extension/count_cells.c
5c8134a7fa702b5a1cf68285db91335dd445ebfd0d7e7c22dd83d4df4936dbbe 21569 duckhts_extension/count_error_model.c
1c596a7863413ff27d6d6d0613d55eefee7e41a66ba413b5dc8f6832662e2649 6684 duckhts_extension/count_error_sql.c
c74e84df07a71aa9df0b5aa951da7f8ae5c6da824d38de9dd578da5f7e7cc533 18913 duckhts_extension/count_error_udf.c
27b8474f744fed18c97c079d1d34c48cfdd8235acf2bca5a497945b6b0c292e1 19977 duckhts_extension/count_mixture_model.c
966e9477db2ed5bc7771836cc8bd1ac836dcd6f75e9374b4593f5a9ff70e7112 6455 duckhts_extension/count_mixture_sql.c
e4f6ed705858a8ca39ef4583899aa634cf02e5b53871f8b41e26abb7f711a13f 26335 duckhts_extension/count_mixture_udf.c
343e4a1be1b701f378471d1eff0bc761a9437904e83c325f6c52b9d54889e215 32796 duckhts_extension/depth_sql.c
e59e991cb0eb8eec420e66ee7445e924cc15fcd994cee8879ecc0949a9c5e2e4 31382 duckhts_extension/depth_state_hmm.c
82a96b5325ad9c726e3befc40e4657d5ad7aec0612c892274ec1e414281787c8 24380 duckhts_extension/depth_state_udf.c
be2aecb6146a76bf05d67b4ff8ef7143f7ab47c4ff7b61383be9cb836ce1ca33 115125 duckhts_extension/duckdb_capi/duckdb_extension.h
ae1792389223c0070c34c5fd152b225acb3a7834cbeefec7433b48d3785d7151 243743 duckhts_extension/duckdb_capi/duckdb.h
7e17fd31249fa875cb3b1c5e05c6c3e99b75509f6a2804ca176c217834de1dcb 1072 duckhts_extension/duckdb_capi/LICENSE
65233513b00a7e11ca6c49e8c7f7380bc459315ab9477881086e83af068131cd 3235 duckhts_extension/duckhts_sources.tsv
ea64ba48db9889414ca23b134cefa6d92a5e012ca58aa4ec4d990ac352147992 90467 duckhts_extension/duckhts.c
2e818f2fcad11a385431f7bf98dc699ebde130069b05ac0cf6c6b541aee118dd 12895 duckhts_extension/extension_registration.c
91009acbd2bf084a2875fc6c90ea61b81d0409aa484214d95f83bd8de0abc290 23642 duckhts_extension/fastq_qc.c
e568cbbc71e8b9cc1ba8d2e9d209b708e2bb91366d4d09a4aafe665aa57a9bd0 37097 duckhts_extension/genbank_core.c
36b99c303b141e68688dbfdb87a9df82c0a4f77a0f5a6d5ff9a4e6ccffd54c2c 33796 duckhts_extension/genbank_reader.c
b8f88f87d7bd759ae842411beaa5921294bc7316effce9e05d69838cbafe3740 30785 duckhts_extension/geno_reader.c
53b0883a847dbe12458944424f14f86204ba99f0ebfe2268ff6cd647504ca5d2 15326 duckhts_extension/hts_index_builder.c
e3029b5368d1aea20d1c045f41319af2607785fcd786f6a45c4a37b6712f9a4a 73071 duckhts_extension/hts_meta_reader.c
08fec5212fcaadf3644d11d6ef4bc303bcbd5dddc502da1b1e3c489a8e6302b7 17985 duckhts_extension/htslib/include/htslib/bgzf.h
5234e3cf7e006ea8a95e55a328546dbe96eae4ec771a835e7710e350155439b1 24614 duckhts_extension/htslib/include/htslib/cram.h
4709d5532dbf76002e9af95a8487bc8661269024958ff2c8d5169b498d58ffe6 15998 duckhts_extension/htslib/include/htslib/faidx.h
6c173e77a93b454f45d21c717eec01329cdedbaaffd64af3e2dc1c0d3a54f58e 14065 duckhts_extension/htslib/include/htslib/hfile.h
f527997a58ed810b953d33682266fac87eddfc5fc52cc648def2551447f19681 11143 duckhts_extension/htslib/include/htslib/hts_alloc.h
c165df97a9cdc3d5619c67ceff167d7d5503f577e9dbcdd42d2da9189dba44f4 4948 duckhts_extension/htslib/include/htslib/hts_defs.h
e20ea25f51034ee01fdbc916f3e27574b96c1dc8caa1214d94fce722aa42bae2 11729 duckhts_extension/htslib/include/htslib/hts_endian.h
300d27f523420899409dd6ccc948c06fda9bbb2e6450822e17240c0009ba78ec 5991 duckhts_extension/htslib/include/htslib/hts_expr.h
d24d9c9f3afb92bc71425c711787748efd46852011a26ad6a84ccbab061ce685 3958 duckhts_extension/htslib/include/htslib/hts_log.h
3481c3ce931e801b912d962bd0824cd1bfc314a96578c22a15bf5c38ffafb557 2842 duckhts_extension/htslib/include/htslib/hts_os.h
ef8884495a5fa3cb7f2063212095b951e4e31f2f2d74bd2b4980669f2794bc45 58345 duckhts_extension/htslib/include/htslib/hts.h
3a365b58b8fee3c28bf6f6b434f8b9248e93d67a80b4752be59bf5de0f589d11 5646 duckhts_extension/htslib/include/htslib/kbitset.h
9dbe4f59dae695755f6e94e8af13591a0cd042c917296e9d9f9c43adc1f2d9ca 2828 duckhts_extension/htslib/include/htslib/kfunc.h
9d317eed7880722916b6c0abe90c672c8dbc99a119762d62e22c387e236b2541 4050 duckhts_extension/htslib/include/htslib/khash_str2int.h
a1405dc375003d71d11f1c9ac4a6f9e724435f322236afdf156a7140cf5c7307 28269 duckhts_extension/htslib/include/htslib/khash.h
f5928fae351b1b28b40c6fe8957f5d6008fa8ac30ee75899c242557bbabe0b88 5189 duckhts_extension/htslib/include/htslib/klist.h
4db065dca43f85a9480c36efdce3c45ad92a0eb29e4a851e9f1417998a3de6be 3733 duckhts_extension/htslib/include/htslib/knetfile.h
6ba71cdbfcddaf3a0f6a3995a449167d3baf5592b872ae8cb272802eb4469a8c 3295 duckhts_extension/htslib/include/htslib/kroundup.h
f921f612340ec4333abfa56b415a33d91e8ddd912a76bcd2b743836ee92bee61 9357 duckhts_extension/htslib/include/htslib/kseq.h
eb10232540b3c6a421816f1cb4067cab749e3f2fb51ae7c197a48469b5563757 11585 duckhts_extension/htslib/include/htslib/ksort.h
7f62afa19dda9e2c38df964489df50c63d5ae260f9f3ecaa833ee39712d6461d 14267 duckhts_extension/htslib/include/htslib/kstring.h
97f1c5d0e52a059f591bf3b011bcd700df01be092633aaea825349d8b936ebb1 8881 duckhts_extension/htslib/include/htslib/regidx.h
72c50326871911cc956b5766e83b2d6dd8130ae17cff4d5bf1886f7f6081508d 94018 duckhts_extension/htslib/include/htslib/sam.h
9b5753f786d88b59a4ffb41e59a3942df235b1bf8bd5a59be6b0c1b6a7f39f84 20839 duckhts_extension/htslib/include/htslib/synced_bcf_reader.h
6ce76d9052339d9709cf7456e061983430cdfaef94baa95cd8f45b96aaed8120 5194 duckhts_extension/htslib/include/htslib/tbx.h
85f30eb4d1b40981c883117b351e73d906beaae0f853d3d257bd7aaa9fa10243 12969 duckhts_extension/htslib/include/htslib/thread_pool.h
b252632e26c8b53e7506d6f18bb8b7e2c8a3e7c800ffb1681afb4b5653d47f74 1686 duckhts_extension/htslib/include/htslib/vcf_sweep.h
96adacec25d9661ffe927445ee8ccf4775f5e96d5dbb0247fb4622fbd001862c 71092 duckhts_extension/htslib/include/htslib/vcf.h
760d2bb171df7069e842f34667226b38285df1a96438c2663ff938bf143a217c 4919 duckhts_extension/htslib/include/htslib/vcfutils.h
8c49020d16802f1de7e49b115a4cde4221247d0ebc8a70f030ca98ec28547a3a 1284928 duckhts_extension/htslib/lib/libhts.3.dylib
61fe1b84e9a7cbaa0412d8016ec07b74d3edb106c34b526cc8726dd5400fb6c2 4764080 duckhts_extension/htslib/lib/libhts.a
1864966731574ef8303bc7c212371f5d5e96423ca4e0e332358a92140cc59820 1284928 duckhts_extension/htslib/lib/libhts.dylib
6ecc2907b64e66b9ad88cc7a1a3aa266dc3de4466db1108937998eac618412dd 51408 duckhts_extension/htslib/libexec/htslib/hfile_gcs.bundle
8a4edd1da4b7624f4ca1d53daa03c9b19f319676952ef855dee9db74f7a62776 74120 duckhts_extension/htslib/libexec/htslib/hfile_libcurl.bundle
98a29e830722d1b3edace0e216895134b014ce43fa0fde3b46737db4e4b3d9a7 90272 duckhts_extension/htslib/libexec/htslib/hfile_s3.bundle
e0c7a2003def2b3f55816709f205f31104f622215b1dcdbf7b24e0f39d318fb6 4971 duckhts_extension/include/bam_format.h
91bdd288abbbda6a652f0e676004065bc997187ab1f21cd6907c4cf3739663f6 4878 duckhts_extension/include/bam_site_counts.h
eeb056d59177d9bcc46a724a8fd057083a97f23fdb8371c17411a8d7aae712e0 1143 duckhts_extension/include/bcf_field_vector.h
4035d6f1bb3af8c7673179f6acf8346a150e5f50eddd6ce83a118cf215903474 548 duckhts_extension/include/bcf_filter_vector.h
7c7ee76e73344529d9f1bfdeed5d247cfc6904f0827fec461ad7500639c8abc9 1412 duckhts_extension/include/bcf_format.h
63d10f37fb032209890faf7c554adc386d7715d3e7c3cd60a2398d2c63fbde71 1601 duckhts_extension/include/bcf_genotypes.h
17a706522d9581376cb62e64bc6c9d5507d58fa97110e4fae7ea6f27cea6e622 2002 duckhts_extension/include/bcf_index_snapshot.h
652300e548caa2ed73bb9c62d8d74b52ec75433b7fb9c6c0cee1a20acd105b54 6430 duckhts_extension/include/bcf_scan.h
9041e73a01dc4f0d85d06e4a40a5622157a69f8626d2d3f0b69dcb468f8f031c 121 duckhts_extension/include/bcftools_filter_config.h
aa58f0699ad149354d6ab732b7b2e7c72568614a213d4f07aa1b2268c0f580e5 1295 duckhts_extension/include/bcftools_shim.h
51ee0b3dce20615121c2a5ea62e6aa46d52a7f4ad9478711bf13d813b9cec99c 1776 duckhts_extension/include/bed_line.h
dfb6223abc07e98bd054ea31dea297e5e493ba95d77bca0804dad739f5e19997 3259 duckhts_extension/include/cgranges.h
a24b8de7309c7875295c7fe1e61e9a5c29030351a21903e0c94592ffe039818d 2783 duckhts_extension/include/count_cells.h
fad9a9edbfda5471be039857eca5d6ac40997fb8933d5b1b4d38a574aa6428fa 3631 duckhts_extension/include/count_error_model.h
73c0773dc6a41f269cb0d5f1b3b2e3b85152404a9f3b133e069c0227b66d429d 2755 duckhts_extension/include/count_mixture_model.h
19f873dae7ff9f4a945a4dffca35850669ee7f718e0358e247050203d6b33ac3 914 duckhts_extension/include/count_sql.h
46f30f0dec95f9471950d902e7c647615c7170ee90f2a19d00fc7076db010f40 4294 duckhts_extension/include/depth_state_hmm.h
4bdc7c1a50468e776fa14007ed34e7400cc28ac532a1436b116384db06b64d58 893 duckhts_extension/include/duckdb_alloc.h
f561f6ac81fe67db2f97ed6bc4de0ed3a022d5d60432b47f27f9459b5ff32b93 810 duckhts_extension/include/duckdb_list.h
26d4c2c3a5660da929bcd502453549b3676870ebbf310f7115f45c13322cfd2d 4633 duckhts_extension/include/duckdb_map.h
a7b48f5c8ebbce3ba56d70fc569a99d906bad9f08ea82a026961599b48ed5124 4923 duckhts_extension/include/duckhts_cigar.h
0ad32e2c91b158bda0e75b08bc090ca218a3dc4c0009576905fa323fbe646055 3453 duckhts_extension/include/duckhts_output_file.h
ee22311f0e8d116e0ef4b8ff845fd19ad7adaff906d32f3ce3032502de3a5cf3 1876 duckhts_extension/include/duckhts_public_macros.h
d12354880b078505d24c634d20abc443a9d8cf98b8905ad01866782dbe75292f 981 duckhts_extension/include/duckhts_registration.h
c19ea5bf8d8d2c64bebf8aaba138c78127558fdca1a579f3ed022546866efa44 6827 duckhts_extension/include/duckhts_simd_internal.h
e6deb56630025c01ba69d7ffd1e5be1047d3d12edb88211a00e171cbb76857e0 720 duckhts_extension/include/duckhts_simd_kernels.def
bd3eebd57568efed0bd17f83523c686545a440f1f8173f1cc2b7335a7df3daa7 2699 duckhts_extension/include/duckhts_simd.h
f86050f9ddbe163cc08ad48b6833ed6113b06374f053d89debfd06cd54647201 287 duckhts_extension/include/duckhts_somalier_panel_sql.h
c239a5a9bf12bec2d13659cd1097f719ba821c1667d7094fad255533446f0b5d 16054 duckhts_extension/include/duckhts_somalier.h
62e85026ed84111b7088fc55e0ed65088f95ea61c11462a1ee3256d3f1d142ca 4266 duckhts_extension/include/filter.h
ca55a7e794467f7344d525c5361620aa1764e621fbb67642b15297353b8ef9ee 7845 duckhts_extension/include/genbank_core.h
e2acec2a5150441f77c1c6a467397a223c5a5b6bc0c76dbba884091062f04a86 7089 duckhts_extension/include/hts_io_tuning.h
4582c7fd4b98f61339ce677bb1daa7a45a53075b112a494a335525c4bda72074 21543 duckhts_extension/include/khash.h
352534dad29f5f4dfd78710cb84085607774375162694d825d9a0ededc56f376 515 duckhts_extension/include/liftover_nw_limit.h
56fab0772b02a68ae66505fa7107c3cc023180e1de6dc2cb72da8eadd248d98f 1682 duckhts_extension/include/named_attribute_columns.h
59fb549352be496bea9821fbcf96e697de939ef77e702a920f26cfeb41eafa5d 1521 duckhts_extension/include/quality_encoding.h
91239b538a14cac649d99d2ed397ea27cb37ed72909a72f5e15f401b5933522f 1892 duckhts_extension/include/reference_cache.h
3297b3fde73e2654720ae63ed43859cde6c62efef325526a2bcca68161b18428 2843 duckhts_extension/include/region_list.h
5178aa24e22d6708e7aca7c225e6ab86029ecdef01abf35e06ef7eeb1ee6d3a3 4111 duckhts_extension/include/regions_bind.h
afec7e6d829d4082d0849d0d3042ea4395b37773072b42cf45a502acc5fe5fec 6347 duckhts_extension/include/roh_hmm.h
39a6b4bf26785393c49acc72c97df23018c548ae9c550fa2a7f2e7b3a41c12e9 3135 duckhts_extension/include/roh_sites.h
448e3148259e5ebb24871094f9300a426a1b47d4a98710a13d33a62b0be1f607 2965 duckhts_extension/include/seq_encoding.h
5673bbfda71c7ef9552eca03a302cb0919c8836ffc20d3d468d829306aac98b3 1027 duckhts_extension/include/variantkey_compat.h
a7f71ccb312865c670ae9f1d269b49ee6eb0074fa704f5d08d0b947d8b7a7bc9 2989 duckhts_extension/include/variantkey/hex.h
ae6d86d0d22adbe6ab061c6ec76748eb78bb5b4250c4fdc8643002825fd5ecab 1143 duckhts_extension/include/variantkey/LICENSE
3950afbe0e6dc606cb2b603feb075e1464f5932eef4e17b183e43547a061d01f 12864 duckhts_extension/include/variantkey/regionkey.h
6bef9b79e5ef63e467092968b700e9004a052720bff67ca3619330ba80bb06da 20985 duckhts_extension/include/variantkey/variantkey.h
f8317b20287e613f89b3f3619ea71cad99f3cc3893a08bb540c6cc33cfed8278 2550 duckhts_extension/include/vep_parser.h
5f6a03583ce6a6d12027a109bf9dc3446938e6d3814f8cb12d6af8703946f11d 733 duckhts_extension/include/wasm_http_hfile.h
5c4760273ec0df0141b6c362a584521f17eb9e8a80d09266517691509bb5b72b 1880 duckhts_extension/include/wasm_socket_compat.h
2b927867fb4ff8cf1eae1520ac2c049932574ee99e7a76c62d4d16d52a7ead31 5571 duckhts_extension/insert_size_sql.c
3107761fde378c234c51e7e8697bd15b446ef880c285ffae80e608b05d5913ba 47971 duckhts_extension/interval_udf.c
07f6dd1f62de6e62296b93c1084c361f4448ca6a60e0ef8ac6a66c8fad2a99ef 82116 duckhts_extension/kmer_udf.c
c80ca1091f0eedeb5b1de358a745fb83f31721134f4cee7633e15c1e3bb2687c 5111 duckhts_extension/libbigwig_hfile_io.c
711014658c78e1861510dfdb68a8b7cdb4a70c307b5c6b56b342a6d3cf55f535 30106 duckhts_extension/libBigWig/bigWig.h
96f8767a7a9d31abf72c5df871934672113d19fcd2c115ef3d45390d0914e42c 4687 duckhts_extension/libBigWig/bigWigIO.h
9ef2854b8a838276c9d65ae1f4afa865543066b1229ed3773624813b653cc00c 2973 duckhts_extension/libBigWig/bwCommon.h
2f4e7e87375d10bb90e128e66a8a6e76c37a0f1248ece51b533798865b30bcc4 13826 duckhts_extension/libBigWig/bwRead.c
6f2235f54f04da164b6accdec74c2020d9662e10e01612794e800348f6a10bbe 26865 duckhts_extension/libBigWig/bwValues.c
31f4df88ddc4c113832abf194cd209ab4ea764b7c89c6f7648c2d9a6375e6905 3921 duckhts_extension/libBigWig/bwValues.h
473ab8ab915d10e963ee3d6ff171472293cba9e1e5485313dc13563940ad1ac4 41 duckhts_extension/libBigWig/COMMIT
7d1a05bb3e38c3a261957a7bb42622883419d34d6c717aaf52fa724fb2dbc340 1077 duckhts_extension/libBigWig/LICENSE
045dd125222edcec618f08a6bb10ec1855453fd5be348416f3e2de5ceb326583 12761 duckhts_extension/libBigWig/README.md
a923d0f6c0a85a4e7378295700bc2b0786fc46ba099fd5de8d74cc3438fcfa9d 84 duckhts_extension/libBigWig/SOURCE_URL
cfbf15ba7e9559db9841b246a12a79b51c44b2215137b652dc8f35b100b7ae86 12966 duckhts_extension/libBigWig/test/test.bw
aa064bb47df6cf6507f39f4e35eb6d6c28d3e2dda3e8bd97cddda7c542a494fc 1077 duckhts_extension/LICENSE
d52abbc14374ab122a90aa1a45f94fc68a4166f9dc4fac6f5b010303ecf2fd60 96208 duckhts_extension/liftover_udf.c
204166459251f83b435f2e435a9018082155972338f7b54bf14276fc8aac2058 104222 duckhts_extension/mosdepth_table.c
3282896917b5341573a12ff59c91203321be17ab72608669550940d2715cd822 23734 duckhts_extension/munge_udf.c
4b2d1159041aa89a78a6482796ed5309ba5f946f1e73256713f4ed40a8e9621a 5103 duckhts_extension/named_attribute_columns.c
a048caa75617f4829e54022280c00151497920ea51a2aaebb11a1c503f4fd6a8 6861 duckhts_extension/quality_encoding_reader.c
c9e270473d7bf77d67a6c2eab0e6155a55f51bcddd7b26ac706f8db25cd33571 7253 duckhts_extension/quality_encoding.c
4a900cbafcd7ad5ad34bd9c812e2007bc67bc9bd3ff4e3f7479906efb83e2094 8991 duckhts_extension/reference_cache.c
9a06955d9b7a469ca5309b8bc0d42138baea5d3eceb6a069c04b2f7b3d18316b 8505 duckhts_extension/region_list.c
267281bbd5686f8d3a7faef9084ef9d04a992e405b578ad5e452e4b0c9b6b9e1 21748 duckhts_extension/roh_hmm.c
82bb6c573a353e914e24c72c61b76e6c15d47e57af6026a0389fa3c611acdd39 22642 duckhts_extension/roh_sites.c
cf736b41e2691d331499062ed356fa1da60702cb104573f8754510ebbff1559c 44503 duckhts_extension/roh_sql.c
861c5cf67514e434a213dc8a6b58cee8c01e3e3c6d0e0603a4354bd155e5cbd3 54335 duckhts_extension/roh_udf.c
2169435324a5ee725924239a5719672cd473d3e4a8f0818314c2b7b657c3f34d 15146 duckhts_extension/samtools_idxstats_table.c
71f5a86e98d1c8937b21417593f3a7ee11bdc802678520d57df8ae54e917d243 109842 duckhts_extension/score_udf.c
4122534d5a6e0727a463632a1c9ac80c5e829fbe131a881387ce6c67d54481f5 63039 duckhts_extension/seq_reader.c
38af25f72194bd13a73e71c6248257734166ed87181bc0146d5ef816aad6d853 15937 duckhts_extension/simd/duckhts_simd_avx2.c
3f26b5dfc49642f4a940a808b66518fdcd69eb122ba0ad421dd9beb4463d1809 3839 duckhts_extension/simd/duckhts_simd_avx512.c
01afce535189679e860f487fda3530d95cab87f0f2bbca81205195163ae1be91 45207 duckhts_extension/simd/duckhts_simd_dispatch.c
cdfe7a3d93064e314f8206ed21ab4010d7cd4f71b687d6bc33e9c4b8cace2add 13239 duckhts_extension/simd/duckhts_simd_neon.c
8f4b128a62b87dc057604594235a7aa62b7b3b4e13ffa65d73cab8ae30407429 6529 duckhts_extension/simd/duckhts_simd_scalar.c
d331a9c2da988e3d277f2feedad3212dd2a947b0985122aba81c269fcba4867f 13783 duckhts_extension/simd/duckhts_simd_wasm_simd128.c
a7707d615c5c719b5eb1c48df723f0497860834cb85f89c6757389ac69223c31 53739 duckhts_extension/somalier_bam_extract_sql.c
84e9527444bb74cb9fe29c2bcded456c52302e4c98e67951be8588053360549c 42034 duckhts_extension/somalier_contamination_sql.c
46b4b18473ab9417b755428e8ec5e04bd8255c7395d0b05aaefb0d5bcaf624b1 6210 duckhts_extension/somalier_find_sites_sql.c
dd566c6f06f3e33f08215dbcab4aa1a991591efa2aca056289996e11390f8072 40054 duckhts_extension/somalier_matched_sql.c
3b9312475c5860f3948ce53f903459ec833c901b880fe1aac60951e54d2b154f 4996 duckhts_extension/somalier_panel_sql.c
79ba512d0dfd1c43959f9628f1ebff48ac2222f968a75aaa206a904f142df6a3 13020 duckhts_extension/somalier_sex_sql.c
18f53cec1f9fc2fafaf0b852baa7aed01762dab394f4be43578fbac66a5edfed 64964 duckhts_extension/somalier_sql.c
ca8dcd4774688d0d6084f369a3845ad5cf43b2b5e4b31192d08e68a2145e7f77 15825 duckhts_extension/somalier_vcf_extract_sql.c
df13bd91905efbb29bb9c190d188dd388ceed8e9cba994928e08e492f54d37b0 78299 duckhts_extension/somalier.c
9a65d8dc92e9cc20118725103d791935380b845e64a01fdf0444cff070a87b28 76780 duckhts_extension/tabix_reader.c
9eee3408d22adfaaa699a05a892e6fc85a3b161ba6c9f1f62ac6d21cea53dcaf 52426 duckhts_extension/variantkey_udf.c
dc8c0b0b2a41c788dded3cbc3c8251bbc26591bab12a67781199102c85439ad3 20487 duckhts_extension/vep_parser.c
9ea2acb04174bf75886300ea6f28b37ac76fb4a8c941804eb2d7b5f3defd913a 23176 duckhts_extension/wasm_http_hfile.c
5cef051dd0c8e1a77c9811d3322ad0d7257f0cb41cd1722338138220f4b21480 132 extdata/aux_tags.sam.gz
73a17ff61c43c198c3c4d7a0b9fe8a4eedde9f9fa9e01553068437c53b5e8267 77 extdata/bad.bed
300f019f7c0ceb19ae16232b06bd5293953cffc03536e690ee625827bb5ac8c3 454 extdata/bam_materialize.sam
754aeada86a7b331e2edd10e0957089f82792e1e9d795cbf29ecbc98ba158552 498 extdata/bam_mismatch.bam
31b05d0b29ba6466f326953eafa45f30d0091ca2224f9c6d8b76b549f59dc09e 176 extdata/bam_mismatch.bam.bai
d9604842090f495a824f2a8ad4ae1f8d914281383eb5f97e2bb40d288aef31b2 1599 extdata/bam_mismatch.cram
49387af14419a72a195565a48f63c799d5d58ce2a77f756ab2e214491f54f680 68 extdata/bam_mismatch.cram.crai
4ace1256ce9f32cefc5afd38d8041f9cfc754ec90cc76e61352a889cdc4abf94 354 extdata/bam_mismatch.fa
46bc1bfd49caf9b12a559fbad1d1862b9a52ee1ce367d14cd072e7c39a1d11d3 37 extdata/bam_mismatch.fa.fai
1198a9b76b0c5673b128baf0ba675dcba6de01fab5eb697b2f31438ea331216a 355 extdata/bam_mismatch.mask.bcf
753bb6d54e946ec0b6b3f0a6a865a74743150e7fad7ce63b370a343cb787b495 87 extdata/bam_mismatch.mask.bcf.csi
9d517eec5058095778dbac7bfc3441eed04af888955f9a344ed4010cbb0ad46a 196 extdata/bam_offset_gzip.bam
63af857846e34ecf6747a74333b83f62cb7f8c22ee5ddf0e667ff00b3bf27281 386 extdata/bam_offset_uncompressed.bam
dba3a69518c09cc4c483e7d10929b151fccb1fc4d6007ba190f0116aa0a3b59d 252 extdata/bam_offset.sam
565116bc6be2fe2d6a838e186899a498bb4ca375af3fa904ace932ac268fc7cc 224 extdata/bam_offset.sam.bgz
a4b0ba0d1d5f23fbeb4c35941a6a2790d5bd5359e694c859b476b5d2d24b69bb 155 extdata/bam_offset.sam.gz
a6162c5148745956aa9a2d7796a1ce46eeeb22761fc9bd4d980b0135c3020980 496 extdata/bam_read_groups.sam
11182643502d760304d64bedf5201557819c5b4d71efa30e50f2033f6456b371 11625 extdata/bam_record_ends.tsv
7f68aad28792ecea13b6c31c6abb33cfc89f8b8f048679a6ba117bb3e13cee75 586 extdata/bam_scan_all_unplaced.bam
7ed583a1c5c49688f29e34f205a217e044153ef4b763027131cd1c67690eaa74 40 extdata/bam_scan_all_unplaced.bam.bai
96b6d8c44d4396a068e1a850c24c7fb17d8157329b03fc2aef7a52b9ab19a5fc 70 extdata/bam_scan_all_unplaced.bam.csi
491fbba2036086fe9600758db179f550a5f592e757696c3c81ca442ad9ef48d1 32 extdata/bam_scan_all_unplaced.bam.legacy.bai
a7c9cfb14047c18d68bd2797666933fdd86adec8d1a91278baf0c4eadc6e95e2 67 extdata/bam_scan_all_unplaced.bam.legacy.csi
5f9250cb0933f7f3d95933741cd50e0f425f3bc9578330f11072cbc1adf84791 596 extdata/bam_scan_all_unplaced.cram
3be71a2f7190fe0dc6b85f79618ce6e5d0d75d4005b39a0f1136657f230b31a3 38 extdata/bam_scan_all_unplaced.cram.crai
e4309c15f8a668de290ad23ad7b07fbeb391356f507540cb64935684b7ded755 143 extdata/bam_scan_empty.bam
045bea336098e59524e41ff31061ecd65562826a5ff5387cf65f4b1231295260 40 extdata/bam_scan_empty.bam.bai
86ce816c2834701c15ee08bed561eac0b5db91ad69ce5e9b604e092752c91034 67 extdata/bam_scan_empty.bam.csi
491fbba2036086fe9600758db179f550a5f592e757696c3c81ca442ad9ef48d1 32 extdata/bam_scan_empty.bam.legacy.bai
a7c9cfb14047c18d68bd2797666933fdd86adec8d1a91278baf0c4eadc6e95e2 67 extdata/bam_scan_empty.bam.legacy.csi
bec166d7e7c5faf11c3cf6a61ee3034147da67d01737068bd8d822a52df8f061 227 extdata/bam_scan_empty.cram
59869db34853933b239f1e2219cf7d431da006aa919635478511fabbfc8849d2 20 extdata/bam_scan_empty.cram.crai
9ab2829cf5f4903eed66038ffe5d0f5048be1fd8fa99fd94b9ac03ec66417ded 86 extdata/bam_scan_malformed.sam
936529a790a386dfdba7e2f797c94357e3f6481af111b9879900202f9d7966f3 261 extdata/bam_scan_mixed.bam
145db8946f72f260ae140772c327660aad7210142ef9e30cb1a1e602d4f76e81 184 extdata/bam_scan_mixed.bam.bai
99f1f23c0da28fdc8fde509791e6cfacdea332c0e7e2a067d228acec001b90ec 103 extdata/bam_scan_mixed.bam.csi
5b8afca1e29deb21b8c67021e2cf3be6b89ab28f558be0f6175a4471f7aca85e 176 extdata/bam_scan_mixed.bam.legacy.bai
a28ff5adfc31d1031cc908d4a5ce71ceb29c74d675dae7eae10a1a57704bf936 104 extdata/bam_scan_mixed.bam.legacy.csi
4932dc088d206f48c0bff264090effe99748ae985710028e67da814bf5e7f5e2 104 extdata/bam_scan_mixed.bam.nostats.bai
ad8af9be294f59de0399e619fca0a6874f3f407a9969dc921c51e57e5f77f8f4 96 extdata/bam_scan_mixed.bam.nostats.legacy.bai
205f8490e00309c95e7a1729c4a4005842d5b1998d911022ac9c65155b789119 1203 extdata/bam_scan_mixed.cram
b30f8256322cbc240878c5a8faa35cd7955dc5bd036022bff9ce33c70745b4e3 66 extdata/bam_scan_mixed.cram.crai
d0adb990c1eff010ebd76a94cd316282fc2c4e8b7632c6ab2ad35a3a152b2560 222 extdata/bam_scan_single.bam
fde3a174f200458b617f2555f9ca4595dae2dc27867d366825f4030281a3e685 96 extdata/bam_scan_single.bam.bai
0fe0e8dd6c77e479887fe06ce14ec67fdda28f6b8daa7bb04f04fae9757da459 87 extdata/bam_scan_single.bam.csi
711ac3b7e61afe405fa44f50f445c718782ed2320b0b32784006a40553428a43 88 extdata/bam_scan_single.bam.legacy.bai
e18658691314c29dc5cb0d75dcfe992a5b9d0959daac3d89b69863922ca303ac 89 extdata/bam_scan_single.bam.legacy.csi
94afe9df8dd6a0648e62b19a148bcaad5acd0b4b4ead9d09c3ab03d5e07462de 832 extdata/bam_scan_single.cram
da76e13fa121387bb1ac2f54c39a0ea41ce1504099b597863d762658ee14ff4d 55 extdata/bam_scan_single.cram.crai
0b6bcc8db0aac48ba3cbe21e31eb8f42b2a30f7478f9b255f595882ff15b999f 809 extdata/bcf_cache_lifecycle.vcf
e9602eaeb1e23379bf6b5a3ca97b78ff3a090b7fc58c50f6683b88bc182bbf39 163979 extdata/bcf_filter_list_regression.vcf
59c8a716b2947490232e2c84ed48a79660dd022e1a2a0f86ffe7ca0437af599c 323 extdata/bcf_format_type_clash.bcf
987700fa0e8792f25a17e64a13bcf6bfd1ecd7a5c9e30c456bee29c20ab1c879 302 extdata/bcf_info_str_clash.bcf
d09bc6e16b90d3f2954e9a01095a1cc11d403094479c62f55a44b4ed721ca06f 306 extdata/bcf_info_type_clash.bcf
5bc483d4c53fc5b8ac98aa096037a94ee1bf1b243224537610f5d231a1c89af1 376 extdata/bcf_literal_contigs.bcf
2cc2e8ebad8773463c97296c6782466040a941a112d64e41d2c6e9dafafe70d1 114 extdata/bcf_literal_contigs.bcf.csi
89ddd912bd5e8a36f51778d6f3288cde1fc891991ae263186ff24f57c6b48bcd 396 extdata/bcf_literal_contigs.vcf
555c75050c48b72b8401bf12d0cf77550a6efcfaac223c0f43165785d5d98ec0 358 extdata/bcf_literal_contigs.vcf.gz
de479039fc30e6cf62cf7e4cf8ed885d31205b1d33cb51cf0d8175490e1de003 132 extdata/bcf_literal_contigs.vcf.gz.tbi
fc2c9c73ce7fe7fe45ded259bb98402ac1e78416be0d96d850799ad2164d2247 696 extdata/bcf_offset_plain.vcf
9c91d16884e5925bc4714a8ad82be04a06e43f0ba79283134be990d191dbe199 3314 extdata/bcf_offset.bcf
5a13fa62aa7836d088809725c98e9bad975f14b9366235031746b986a508d237 196 extdata/bcf_offset.bcf.csi
2bf8a2a9e103c4ff199158d16aaa54602875d4df34ad175a9ac4aa222ca05d37 2028 extdata/bcf_offset.vcf.gz
2f32239981d2cfeb9fb83107cb3de2875dde934042e46c2229da9247776e833a 212 extdata/bcf_offset.vcf.gz.tbi
7640381ee07552c8b0c6148cd0d2cd33a84efeee3c4f5404072d512c09327749 12348 extdata/bcf_record_ends.tsv
bb0b9dc72107bc8cd3a2cd4b0afd8065d7fe095b2ba22d90ba0bbe992696706f 735 extdata/bcf_scalar_counts.bcf
ef2d600780793d73eb60538a811ece3391a3b3c660d4bba60f93b88d5511e1af 100 extdata/bcf_scalar_counts.bcf.csi
8d482f7e0a3f1cbb3223ed35c21111a332fa8a4001b6d723635ffbafaa57b1bb 1197 extdata/bcf_scalar_counts.vcf
82b67af809ad7619e7058f9129b0f09442758c0663a0392640ebc0a3c1a2cfa9 613 extdata/bcf_scalar_counts.vcf.gz
f01cd258003b335e5ac86825c812ca98921b2039bf263735685c47aad8100393 106 extdata/bcf_scalar_counts.vcf.gz.tbi
5b7393c26dc9c034298a406024f215d9dcdcbfbff1cc8398c9d60359bffafa4b 470 extdata/bcf_scan_contigs.bcf
118038565468dc127a0f3a3d74fac756190af356cfd697bd52e80dd9140c7a8c 119 extdata/bcf_scan_contigs.bcf.csi
2de2714514a7b29fc77a0e31f7d79253af8ba76b43b84cb17724ddb90ab71778 306 extdata/bcf_scan_contigs.empty.bcf
101a63aa7777654e58018ae4f48b501df04e125f9a00637f32e70f2005f2704e 71 extdata/bcf_scan_contigs.empty.bcf.csi
8559333e0414e9d0c99901385107f29b1b76fa245a9af8dd7709cf0c8230b671 279 extdata/bcf_scan_contigs.empty.vcf.gz
ad922684798bf72a2bef2794715722bad705061a40b62f180ca12abbade7fd2a 79 extdata/bcf_scan_contigs.empty.vcf.gz.index.csi
5c9e74e847b0ca3ca72ab2bcc803ac43efaff23fa701271af7d9208df054c08e 72 extdata/bcf_scan_contigs.empty.vcf.gz.index.tbi
b533516fcca736eb780527dcd7bf9c878d6d5b2a342962609e1e428dccdc183f 424 extdata/bcf_scan_contigs.full.vcf.gz
96c9acda59f5d5feedc863e6e1f4baec7efdd5a02d0075d7311a06ccba8b03b2 136 extdata/bcf_scan_contigs.full.vcf.gz.index.csi
e89a5482376159001092b7a9e865c24bbea1cf5a3f770f1b2c7b3e3e1d25bfb7 126 extdata/bcf_scan_contigs.full.vcf.gz.index.tbi
998d705bd968255c1ce48003175279f7d4b04d717eff370aa2d9fc72bebcec1b 404 extdata/bcf_scan_contigs.none.vcf.gz
c6164bd5fb1a0c487934c1ff104407af02a00d71a82bcdce9e35c60d94fd168c 136 extdata/bcf_scan_contigs.none.vcf.gz.index.csi
e3e610be76ccc9553ac9269a442a701cbd007c1ac741e9b8156175f1ca082d65 126 extdata/bcf_scan_contigs.none.vcf.gz.index.tbi
7b711860c37207ca4f8a1dc35644654b521f47c31fac29c20e54a7fe0013996d 421 extdata/bcf_scan_contigs.partial.vcf.gz
476a847608e9f9dcaccccfc4e6e26eb0f7ec91bd4de914f0fcb71d151e3472df 136 extdata/bcf_scan_contigs.partial.vcf.gz.index.csi
dbd70e20110d503aa6379c9e82f300deda32b6c77d9bca9f79379058e2ec9448 126 extdata/bcf_scan_contigs.partial.vcf.gz.index.tbi
c1b3ff2961fe5cf300eefce2ab6b7ab281b6f67db342693dc64d8a608abe19d3 639 extdata/bcf_scan_contigs.shifted.bcf
f052e3e9ebd3e1cc0762992f4aa57f532d7ee0f7135a066e6db6b63a1b794b3c 120 extdata/bcf_scan_contigs.shifted.bcf.csi
100742390917f6c1b69e84eaa64e3b2d43d3cf199202d39e6173dcbc74b40e4d 602 extdata/bcf_scan_contigs.shifted.vcf.gz
4d20649341584396ff13afe97e98bf0fafe171fc5bb69117c74a781980464e63 136 extdata/bcf_scan_contigs.shifted.vcf.gz.index.csi
629545f670d122583bfa2e5717aaf817767c766b317705e595e6a5da3c876dc8 126 extdata/bcf_scan_contigs.shifted.vcf.gz.index.tbi
839cc5b008bc13cc1a85f731b7e3068d94e655820074e4b22a6f1a91b0231c36 559 extdata/bcf_scan_contigs.vcf
5d3f658473dfd256e31309291bc7afe16b47c0d8f0286f06ef36891c71fb097f 157 extdata/bed_error_policy.bed
d0fcf21c453ffec7319f573ee6c23de552c5ca5c85634c212c2a0df9af3e244b 194 extdata/big.bam
cbcbd72d5b499675f92d98a2ed87c6ea3e06bc14de8021a92b2e25f589e19b23 98 extdata/big.bam.csi
5eca163c91918ada9774080ee2274208155f4d1b2d00700ee950cdd7b269508c 1060702 extdata/ce.fa
445a36da04b64dd49b8b964171c6d4b4cafc12e9bff50f8cf4ce33717fec6ff5 230 extdata/ce.fa.fai
056376c400253b130473a5c9ef02799049cfc62394b70c451e52bd172bf6c83e 6334 extdata/colheaders.tsv
47f2b01cd6b006c0c9978d071688775aeba85317581b5ae1791817094cec1c0f 727230 extdata/empty-tids.bam
f5fe9199c9a8149ec7b0eb1dad48db2ef996044b48964c1eb02450c0e75ff049 2544 extdata/empty-tids.bam.bai
eb6553264be1bf28c2ef982c9326f340102f5152d93b42d4d6d9ef17c776b9fd 2702 extdata/empty-tids.bed
37a9056137080e8227237aba8608c942ee36f65de6a7a750919dc42b68fb915b 1507 extdata/ensembl_release_consequences.vcf
0e92d1b74c26f106dc2535a984cee32002ac1656ff3df41cd1aa9d9248895938 30 extdata/faidx_invalid.bed
7f65efac330dc86dd05b4f6c0c71ff0abffd1c7ec6ddcfc7510e110a4273e1db 9 extdata/faidx_invalid.fa
6c54616c2c9e1bee4f76af295d402ab5ff0dc7541d48bb85d558a437d53661e1 70 extdata/faidx_invalid.fa.fai
a147b7cedee45621cd3ae375bb0178d994c74e838c03fac665322719a3c90ed4 294 extdata/fastq_long_qname.fq
d0124a270184c011d580fd790189c38863730957f2409cc5c64943b41d52f70b 98 extdata/fastq_multiline.fq
cf18e762095705609f6aa6890435a996f3fe90b678e79b0aebd149c9fdfcedf9 22 extdata/fastq_truncated.fq
ceca79d1f614db51a8a180f72e6c84a58fa2842219d3f366789bec38d8373d4c 532 extdata/fixed_count_arrays.vcf
4de1c7330a0838784f046f88896430a056ea8c1bc8cd2e4ab9b897d8909bb5ac 29 extdata/fixture_mixed_min_depth_regions.bed
42c778c6a32b7a562483bc03f7869ce2f74463696a4c95b9926576441a8c0a0f 63 extdata/fixture_mixed_regions.bed
639314d4b31cdc711694cfccdbba6bd686d299e0f84f09fc12a780d9f28edb6b 459 extdata/fixture_mixed.bam
4d105d1e643db017aadf73f75ae833a8b245ba372e03ede302e9f0b035a54d02 96 extdata/fixture_mixed.bam.bai
248206e103fcc35d810272df0cd8ef2a77ed27d7f407f1592983d1d0bd31f97e 955 extdata/fixture_mixed.cram
64c2d2057f7ffed445309d597f74711dbe0a21f8a33ceb7c4346ae1a26b37741 47 extdata/fixture_mixed.cram.crai
66a6eeb872597a6213f1b51c2062dfec9a1f1f8918a51dd0125801e0e016b879 358 extdata/fixture_paired.bam
513ffe213d34ae634df2caa457fcdbc363ba0fa0398bb70ed15b92592dee3fad 96 extdata/fixture_paired.bam.bai
419a69744c9617d6920da2d2bc4271e1e97af99ecbf3baef83380301fed37754 50503 extdata/fixture_ref.fa
7598600078971bee6e3bbf14d6892b562ecd0661f828314f8009c0f24c6f9ff5 19 extdata/fixture_ref.fa.fai
2fc9b9a84eaee4ead43c72f9367af184e0088a5b5ee05c534ebca3559ea47c32 320 extdata/fixture_single.bam
5e87d79278235dd4d2cef5fc2a9fcf006b77daf5572cded68cbccf6a2acd716c 96 extdata/fixture_single.bam.bai
149584ec7afe361db583ef295274eb3ad2ceac2df83a96a7a49246b9b0e3c632 459 extdata/fixture_unmapped.sam
c23abe18ca25649b42ebf8c79094b5cb7934aef78e76206f5eb3ce4ca5a6057a 484 extdata/format_string_list.vcf
29ad0710e183bdc7e10dad501f3a14f9a2206c8e37dc6376274eb19fe03b83df 391 extdata/formatcols.vcf.gz
6581c4e5495a73debdfcd9d7dc2617b2ed360fbd833355844fa69c113a0d20fc 111 extdata/formatcols.vcf.gz.csi
b781338c3664eeb5e407ad22b778826d54a935ee7fb7c5519302dc3984df3bc1 1105 extdata/full-fragment-pairs.bam
458315f18535eb98dba60a8f8fa8ec476900d269c5434d86361fca66de1ac0e4 168 extdata/full-fragment-pairs.bam.bai
140c667d8ff639c47eac1d1480338ce38454c9ba772e787608c3e6d7821ae343 719 extdata/genbank_gene_order.gb
a917e5399c87bb7bff3d61e4398ea9890ba935f1f5703b8d57fe216b83d9cc4f 928 extdata/genbank_phase.gb
43f6ea2ae0be6313e4aea078654d44decaa162d70b9f3f17a9163983f2be19bc 503 extdata/geno_calls.bcf
10a9fcb4ba061773b21dd9978a37cf029ef9f26ef608bfaad4469679f21d56ec 99 extdata/geno_calls.bcf.csi
d121d6d58ba5c6e84adfc242600363791f46459f8322a6455fad936149f03e79 993 extdata/geno_calls.vcf
27e3b5cb4ff551686eab2b927bfd7d8a6f38fbf164bf12ca4d9956d244d6f0ab 451 extdata/geno_calls.vcf.gz
ba0ca296cc08ca7b552317db3aca22d11d67240e6f8ad95c2f79f2a6552df568 106 extdata/geno_calls.vcf.gz.tbi
aa235da95926ebfdad36c91adb03162e6f0515e581de0283fe6fb1a61795dc9c 433 extdata/geno_format_case.bcf
3594daaf720167f55e2b406eb462f2b73f5a00eea28fcf6f09381c741a441240 99 extdata/geno_format_case.bcf.csi
cb036a0c95e0a0a8fdd729987f74dfa7ecb20000f32d6e241419ebeb070d8e0d 662 extdata/geno_format_case.vcf
80936ad1aa92ae36c9b6be06d04b1aa22a35a168dbc7c8e205de35ed57c78bbb 403 extdata/geno_format_case.vcf.gz
1ee6df5eca9ccb18c158920e305f7356688430c21e27c5688b8caa98c9451ddf 106 extdata/geno_format_case.vcf.gz.tbi
0476b4ccec96df57dc289de8d43ea1048253745830f31598fc3df0f196654e98 1201 extdata/geno_format.bcf
3304341e57c9ef715c1e85cdb89d49bc3be9fd87371482318cbe9e54eecb6fd5 100 extdata/geno_format.bcf.csi
8780585569336248287ec8d28d8a706a93d7b0b5b576d9366e7dc514104019a2 2387 extdata/geno_format.vcf
a2d53dbda7ac5c42e212c81bed4fb5da4cfae7bb04c2aea185ede5ac15439522 1137 extdata/geno_format.vcf.gz
0fdcaf0eb2f9d6b1b0105f5aa00c3bf24430bb25350619ed296c13c82d8d9c71 107 extdata/geno_format.vcf.gz.tbi
0d6844c576c0b1af181b4699a5e744e3ebd3783bf4dde3f86d9a8c9ac3647fc5 359 extdata/geno_gt_allele.bcf
a96506f47a6e6056f7870fa1aa139b3df2669ab9294882f149bc07c448da89f3 351 extdata/geno_gt_allele.vcf
d1afaf024b5e80c71be14ba08e672f66c292872eb427d219b77fe85bb99101f7 336 extdata/geno_gt_allele.vcf.gz
ec922b1dc5e8125ae4c7c13aa738acbf5a591b2b79764ccea6059aea6f1c6ab9 885 extdata/geno_phase_partial.vcf
c4d4b9cbc87490fb01e861b77b3a48682b5d293a805192c89b594aefe6a73d73 361 extdata/geno_ps_number.bcf
92b5153f7a7da6c393823819abb791402d11ca7fc7597b8b2f3be3cd6bd083ff 351 extdata/geno_ps_number.vcf
743a364dcb1e8621a4ac29b9a7b0d020c7fd81524d51ac8ef31dac266151bead 338 extdata/geno_ps_number.vcf.gz
2ee8ce7e40ee19cc55a48266ef22862fb8f1403e45fe17bdecf5419b98e3ee6b 362 extdata/geno_ps_payload.bcf
376d107a3425ec289747730bf90f6b0be1feabae6aff19b54b0da52b52102d56 358 extdata/geno_ps_type.bcf
4344decaee5ee935b8804bfda1ffae4666ddc83f9bbe9d09e600128bec29bcfe 350 extdata/geno_ps_type.vcf
58ac66e56413e10f9ec4aadcc7d04ed4d3e0b4a4209b45e8cacd3f4f0d641829 331 extdata/geno_ps_type.vcf.gz
f67c852468e2aa20b16c2c2d3d002eed2ca56c4a67d19077feb20d3061adb123 361 extdata/geno_ps_width.bcf
c58273cc9af219aad4d4d66bb06530fbda3e7cb46eeb7cfeb6d9368299873465 354 extdata/geno_ps_width.vcf
848356daf53f2d62b8f4d509d82646d8978c51a158c0bf21807d2f6e29b52104 339 extdata/geno_ps_width.vcf.gz
94bafd66581a785c216b76205bf0bce70eebc252ddf0079917fa22c052bd8abe 680 extdata/geno_raw_gt.vcf
c52175197505d39490b080f7fb09be7a56b24ec9f166796c9da9acc635a21d23 852 extdata/geno_sites.bcf
dcdcdfbcb7c6d1ac66833a4d8380ddd12843a2c4e058f2a6b0980221f5aade85 139 extdata/geno_sites.bcf.csi
feafeb917748618a0195badaced6c856270155794a27634e074a9848a75ad86f 1762 extdata/geno_sites.vcf
a10ee0b4a4646706a4af87a520987a74e04c6dcfa84616ea2631253bd0aaf37b 734 extdata/geno_sites.vcf.gz
0173c1997ff9e667fdd6b79f013bd66c10525ce5659085ffb4bc0d2bb146cb38 172 extdata/geno_sites.vcf.gz.tbi
18dd661ac7680a282696b3ac60561f0c4ca1f037945d5c9c44691fd00f9ad727 384 extdata/geno_vcf44.vcf
4c99a783ed6b68d6b2bb9e39d1bd55b626b6a8a2e90cf0a741ab316f07799743 265 extdata/genotype_ploidy_edge_cases.vcf
fffed9c693dcc2d097dc0a99154f4ec099e5cf281e2d635adac72196382374a5 109 extdata/gff_attrs.gff3
400668d992b16afaa1f6437781c42e9fe37e3df2daa856b26f824c0e08c0e19f 1017 extdata/gff_file.gff.gz
650652a85e378c8f20d58ecdc37c72522e5597301ed3e518ac3aa17d974dc540 128 extdata/gff_file.gff.gz.tbi
7e152b5a787931d86bc8c981368d3f0661127b8a28ded63f9d7004bc83732cb9 469 extdata/gff_named_attributes.gff3
2ef2d8e2b38292ba5c3cffc3be087078f755f91e252f0b2457b353bc7571b3c2 381 extdata/gff_named_attributes.gff3.gz
a6d826f9d89816efd30d9c1fd2d96dc8946c43307886d907dfb73f17f1611e6d 129 extdata/gff_named_attributes.gff3.gz.tbi
3e755f194b0bcf8e5a19944bcff92a9857b557373959f48ce58dd6658559bdc9 53 extdata/gff_strict_extra_field.gff3
ee0fc908f6e84d47bf0e4e23e7e314a0fb0313e0c2fab13823e04fefb4a79197 54 extdata/gff_strict_invalid_attr.gff3
7a4b8dd808b09e9c4899a290bfb64a09a60b87fbb9f3b6708888420a8c9b844d 53 extdata/gff_strict_invalid_end.gff3
87159ee256df8ce5aca1116eb5fe1e6ae3e2ac90236d97c285d61915afaac767 79 extdata/gff_strict_invalid.gff3
75db1726b32b2f3a365c3dc40089dce7c7c9147441d5be5cf144748297bc5301 126 extdata/gff_strict_valid.gff3
efd6f8afe7a038769c52ca917925b0704e968ca7943807b3c91a6ead684c75b8 79 extdata/gtf_attrs.gtf
d1185dc5a8e4ddc37bd38cd08a03218ffcd26a84aa2bf130ee2fa6edf88b324b 530 extdata/gtf_named_attributes.gtf
f4f30aecc497537c81c890930837ffd5106ec38e1d0f4a92bcb79ca828b67229 373 extdata/gtf_named_attributes.gtf.gz
1cd3c0749e99ffab74b5f8624a91e0d62ff1187ca4c7b0c54d9c1b14a96237af 130 extdata/gtf_named_attributes.gtf.gz.tbi
fd027ec2b37f933377b613897544bca5241bb8e9d56a90456dcb5d4d34134fe2 85 extdata/header_tabix.tsv.gz
e4c13f0507e7a696f5f0a7f35b19a5c51c39dedd19c8a0f45e645d8baa286af3 106 extdata/header_tabix.tsv.gz.tbi
7e37e99ac850404c94308c7182a8bd434434307d75405456b85974b0fd393554 200 extdata/insert_size/cases.tsv
6b2662ba4afe6743d28715e8a453a628dea87ffdaa79cb9caddcaa0a63824089 702 extdata/insert_size/edges.bam
d5d23954e43274905d9708b0acb26642fa61e13d189f1550ff9a2561169f708b 104 extdata/insert_size/edges.bam.bai
8a0abc2c65c6a209be0e51a905887fc2250b9bbac6e66e69332f603f30d1f332 1468 extdata/insert_size/edges.cram
34262346293703f3fe6111fc65f2f7188e2d457f63af9c2ce3ff22e7a863b9a8 58 extdata/insert_size/edges.cram.crai
ed526733a8f2325c9642bff1878abf199127760bdc6ecf944d400230859d43fb 157 extdata/insert_size/empty.bam
77373aea8733d005307c969c4d95686fd1717394622da68ff510120bdb5345d7 32 extdata/insert_size/empty.bam.bai
0a0db4390dc5d6a8001ee29d87fef67aa1539ca27903385f8cf65c0e7c34b0f7 447 extdata/insert_size/empty.cram
59869db34853933b239f1e2219cf7d431da006aa919635478511fabbfc8849d2 20 extdata/insert_size/empty.cram.crai
8f73c32c7b49a2d878959bc295989a5d7378927c89ff1df815d441573a0e8058 3073 extdata/insert_size/histograms.tsv
2958dccdc8e24b468f82e64b41e5bdd8912fbe78cecb8dde6a8f8744fd3c3b37 1717 extdata/insert_size/insert_size_reference.sql
df7838c9e23410bd96f7e81f4d3ef3523444c931ef0c60cfafe05874ae56da16 2405 extdata/insert_size/metrics.tsv
ce0c9a619e905186377550c08b8821768de29bc459dd6b77d6c1b28da93599b0 382 extdata/insert_size/provenance.txt
1387d76ab811653a5fb6da400925a4712e6f23a2f3c338884e9ea847d1780f55 3526 extdata/insert_size/reference.fa.gz
4305a0e801baa098e31ef39f2753eefa3ae8b507335859919467767267eb53c8 65 extdata/insert_size/reference.fa.gz.fai
533d632c37ea6c6096b2ca3878ca10ccaa8019ad2db78f36f464f7ea8c2d4745 536 extdata/insert_size/reference.fa.gz.gzi
6b2662ba4afe6743d28715e8a453a628dea87ffdaa79cb9caddcaa0a63824089 702 extdata/insert_size/unindexed.bam
c811424111faef6a48bfcc0e54a01249327e9b1261c04a96cf942de2adeab7c3 2630 extdata/interleaved.fq
b2471a2fa903bda822a79bfcb113de55934a08f740837b4ef18bb4f7a7a08130 21 extdata/legacy_phred64.fq
cfbf15ba7e9559db9841b246a12a79b51c44b2215137b652dc8f35b100b7ae86 12966 extdata/libbigwig_test.bw
6ec1b02459766bce6559d7dc106232b78bb8eab2de6f5e9a1d1dd33a4cf43055 21 extdata/liftover_chr23_alias_dst.fa
8c2f4805a5d65d89c2709022427bd3b4259457659a469078bbc93771b7d8d284 21 extdata/liftover_chr23_alias_dst.fa.fai
19e5763d59738c1334f6eafb9ef641050f25de68646cf6ed9899e0c819784632 17 extdata/liftover_chr23_alias_src.fa
60af18dd0bfad47967c1b03395041fba3e29ce65cecc18ecb92c2c04cfb18e84 16 extdata/liftover_chr23_alias_src.fa.fai
03fcd69481ac838409f4f553829937a59cebae570e14c427f2053a029c2f151b 46 extdata/liftover_chr23_alias.chain
eb0a638baeac868476d4c5f03e528f32aeb8dbdf1a92cc04cdf608c8256b5c7c 20 extdata/liftover_clip_pad_dst.fa
25a765249b0912742d52c5679be21937abbd140c46d9fc4326a6eb27da5cc48a 16 extdata/liftover_clip_pad_dst.fa.fai
7a9df5b860a0b7c5dc07f7fe8e158eb6af0c715a3776781ee7d05d8ce89e4152 20 extdata/liftover_clip_pad_src.fa
047cd3d158d203b4d60ca8e93294fae1a65f9e4c0957eb9b8d74331f23115712 16 extdata/liftover_clip_pad_src.fa.fai
ca3161f64f508d06e2dd1515eb8bcdb1f8f3081305a5fc241b1470374f329f6e 50 extdata/liftover_clip_pad.chain
f575e2e639cd068f2a4a8385d6087f38ecfd678d7626eda27c96d695881b4cde 4011 extdata/liftover_nw_limit_dst.fa
f8bdb72712a55654b6c3f925d5055f729c54b9a509299d8345e03f80cc2b1175 22 extdata/liftover_nw_limit_dst.fa.fai
8313810d9a8b89346c34fea2e1818157d45d15718d47cb63ee831f76d758688e 4012 extdata/liftover_nw_limit_src.fa
54071f900f32d3bb0c689ca5e752324399ad0fff5465c59cc62e5e10b92e4400 22 extdata/liftover_nw_limit_src.fa.fai
55aff31713bcf2ea5a69ab3602a945e54ef3e85a02e999e57108b060ba2af078 64 extdata/liftover_nw_limit.chain
0ba053c63c9e8272218cf98644dbccac4fb362c55f78c6d2e65d12a56ea15954 15 extdata/liftover_repeat_dst.fa
8b22f69ddfb3129151a6a6e1d997c769db0963626321463cbc10688998bcb77f 13 extdata/liftover_repeat_dst.fa.fai
81838a286476f1a9dfc21284824751d3450cf9bde4d1794e8f8d69b5cd4a0f74 14 extdata/liftover_repeat_src.fa
2f586d33b53931b679345bf6140887dc12d449749920bd89364bb1749af756c0 13 extdata/liftover_repeat_src.fa.fai
1a14d558a4d77bd95612f9336b6f7628a5ce210fd4f48d299eab971bafe99310 46 extdata/liftover_repeat.chain
38654dbf47881fffc9155684bec58325bf6875dcbcc8cebb83b595930c38ef23 23 extdata/liftover_star_refadd_dst.fa
fde741f46c04b491d99c642d783e6d4306c3b576571ed2877c2ee7afe9cbf796 16 extdata/liftover_star_refadd_dst.fa.fai
cd60ab79e9bcb2643a41a60f06ba71ac51e95e8619fa2368def31c7a8baffff0 21 extdata/liftover_star_refadd_src.fa
7c1fdbea19165491a07e2c9d4981115820cd383b7a7c065d9457ead9ba6fa92c 16 extdata/liftover_star_refadd_src.fa.fai
eb832868d0dd77809393a5489f58b8eaba384ecb4fee7fc63a6637b5ce54444d 48 extdata/liftover_star_refadd.chain
dfdf3853b19af93ac88e1044b8b1d7a1c1d2d79c0b653928ecf04d5bbe19d562 12 extdata/liftover_star_swap_dst.fa
8bbd4d777a65d884111278ed54ff11b88cda344a293aa311904e98e4880ccafd 13 extdata/liftover_star_swap_dst.fa.fai
0122ef0f0528ba15229ef9f125a13077af32fa23f85f68a057f4cbf787cdb825 12 extdata/liftover_star_swap_src.fa
44a7a6a703dd9d1877e1fe3f39163dc27c3eaf48fd1e5845ded917f7da8bfdce 13 extdata/liftover_star_swap_src.fa.fai
2361d52b8b3435ee3b501b9b25d49e586cec7c9c23593d4ef05a5df734aa57f2 38 extdata/liftover_star_swap.chain
9ca71a18ae420033cd5ea7a3e96db6a9c660fa9f6874a758ee49134a099894bf 214 extdata/malformed_bad_pos.vcf
0f644d9a76c789e76ef4f3a6959a6f3d6e67fa3092220eca14edbda2df4be47a 1823 extdata/mapping_number_families.vcf
46c5e8fa47fb127ee748028e856e5a68589feebccf1ad70896d9311bb15e0c78 93 extdata/meta_tabix.tsv.gz
9634853a7579f0e8d024d5654701b41bcc5bbe78b0e6e513205bf48ca897bf36 106 extdata/meta_tabix.tsv.gz.tbi
e3b0c44298fc1c149afbf4c8996fb92427ae41e4649b934ca495991b7852b855 0 extdata/missing.bed
064ef9e31afe2e810a735301caf9616c397f87970aed193a4b0f4d5dd5fd3720 283081 extdata/nanopore.bam
ed628d118fdd14bac0d577f6b80d7c2b03298d4052f0dbba918768fc392339ca 3352 extdata/nanopore.bam.bai
36aef4daa76f2cfc1db893446ddbfd93c72625680c9854efa084a27401cdb6e8 16 extdata/nuc_with_n.bed
619746b0e0b1b5f3f7acb671b28294867dc87e4b22deae35ed6216d0e86e2055 17 extdata/nuc_with_n.fa
63fbbb8331dfbbc319e177ea981870c26c7facbd4bd4e1a6144948074a714197 688 extdata/overlapping-pairs.bam
0b6d3cef1569223b77a48ab4d2e40ec820831f4f21c3c93cacd92e331eafb25f 368 extdata/overlapping-pairs.bam.bai
885dfb98623defca712bc112dc1e44b522b89c88b0b9399f9c196803f7c363a6 2564 extdata/ovl.bam
bb347765325c1142158b7b10d710ee725c706aae59317c1e28f9cf6fa6de2885 784 extdata/ovl.bam.bai
ac9e43f70c572c56f2371509efa0b8fb4899b312d6cb3ae6923262f94f6c9788 367 extdata/parallel_empty_contigs.bam
3346e2827c051c5dc23e5fd15d44f7637a09e8618e66504acb56777661c37af6 160 extdata/parallel_empty_contigs.bam.bai
07658b1b0dae845eb171c15e0664a9bf0a5d9f4cad3183f84ae44b3356f575d2 1351 extdata/parallel_empty_contigs.bcf
0e48b616b055f892f0f219375662c891f74df29c7068f4a541a2348010ec1fe4 117 extdata/parallel_empty_contigs.bcf.csi
effdb2655c8e1ba1e6668f9426f6de146ab4fd08c13d9f8cd09d0f801da1a2d8 6129 extdata/parallel_empty_contigs.vcf
c25e648875b8adae5ae3472316da0d1a9a6675186d13cea5ee439de3cde921ae 372 extdata/parallel_empty_contigs.vcf.gz
7bf665e7d164385c3b23a46f1cd31488ee6f2623d5282c3134810e35fa7cb2e6 106 extdata/parallel_empty_contigs.vcf.gz.tbi
7a29994602bdb9ba3648155c024b235ca845e7ad2652f9f12a18b8c9939093df 1261 extdata/phased_genotype_fields.vcf
d251690f86f0386459666632cce33da3bdec87455f1b91c08069f22010b6c2e9 26231 extdata/phix174.gb
368bdfa0eae531e343bc708fa42a54ab2b61dc8116a5c93c26b0bc1e7e73cf71 1385 extdata/r1.fq
ca8ae18004cd333c3502cb88c40be8dae7d8d8469c17fa0a4e65f161bcd5dfab 1245 extdata/r2.fq
e15d14e3994027d433431c960bf1c5f2d6939f26b5094cd5a86bc6229a5b2661 13337 extdata/range.bam
f06ef0c00e8ee31d23c16ff78db7e022baec70e430dcb5e0888c6aa94435364b 360 extdata/range.bam.bai
ea9217f5a0dd7e57c0f2a94d55d6285d1e8d35cc741de53f12c19eecd0e84326 11182 extdata/range.cram
fb03d738f4cf48a8cb0469796d6901d3541bfd60a93005607a8fa1abc1b94336 94 extdata/range.cram.crai
33d6a3a4127c502bb90d24c81391b3fb4e0310ae0b17128fe8c2d011635ebdda 131 extdata/region_names.fa
e9a65fb4432e5f204883a2fa00c4123c19effcc0bf79956163a571ab06ac72da 69 extdata/region_names.fa.fai
03cc3b2e42c165b6911eff8e7592f1f4932f342f662b06ba6d2d035dab5e1d63 149 extdata/region_names.fa.gz
e9a65fb4432e5f204883a2fa00c4123c19effcc0bf79956163a571ab06ac72da 69 extdata/region_names.fa.gz.fai
af5570f5a1810b7af78caf4bc70a660f0df51e42baf91d4de5b2328de0e83dfc 8 extdata/region_names.fa.gz.gzi
80e7e4bc62bf558c60b8f59eb9ce746d60f2d3f448d2a81d2c64262979d7b4e9 105 extdata/region_union_no_contig.index.tbi
4ad322a7ac76c5178da05a5d6f018f7868455b94ac5020bd63ca30514e286fbe 387 extdata/region_union_no_contig.vcf.gz
ff14e491db1cf08a83ca9c36ad963c29f8aa9859253c8fc0fdd29820b95c6818 484 extdata/region_union.bcf
11fe74bf435d0b6675c5567f181f96e4ad81fe845feb8333ec67108b5b09bedf 88 extdata/region_union.bcf.csi
0a04dcf37e3a8f355bd0c01e876640a81b83efa71098a0e1ad5b1f8b0feb7bdd 548 extdata/region_union.vcf
55d03ee5e69fefffd255f5292217499b10fc782a840b98e21274a02613a675ae 406 extdata/region_union.vcf.gz
5b9d6b36c7d7f286a5e3d32bee4fcd9955c12cdff5fdc874041ec1abb249325f 105 extdata/region_union.vcf.gz.tbi
82e3b5cfb195203366b212ff2fbab9e25e66d090938abe2eb238476e49afbee0 517 extdata/rg.sam
a99c12640603e0fd49109cb9b77eb546459fcd221ef8f7bf3ea00e9946ea94eb 281 extdata/rg.sam.gz
77caa7c0f6c9430a60e0d2c584abf3f653cbb9dfdfdc5d173c1ad63ce9e35130 113 extdata/rg.sam.gz.tbi
e633d769c5bb425fee0db8de006132ff8cc53d31f2c1ea2fc20501edb99c8d4a 3810 extdata/roh_af.tsv.gz
5f0bfeb2c563be9cd93942966a9cb1422267c4c3b403346d6ab161fbb9c79b2e 327 extdata/roh_empty.vcf
e9901a02fefa75f42b922b712e9d8ad72f12564f6115260500aa6dcb2a34af47 12213 extdata/roh_fixture.vcf.gz
012673e3955224ce1198af10408cedc68d6da33949a19675b9e000f6f68f230f 4194 extdata/roh_gt_only.vcf
5123c3969b627167db77d8643b9c130b1e8b8c0989c2147f8c40bd9e423e883b 918 extdata/roh_map_chr1.txt
beb371426fa280e1356df92b7ef5a79b522b097e0d790a9e9f96e559d804b9b5 679 extdata/roh_map_chr2.txt
8fc8941c866ebbaf365cb6ee4e20590b4d1f0018bbe61c5e5a8186295da13fd4 160 extdata/roh_repeated_af.tsv.gz
f64c4b7844e2b94d7e334fcdb5542808393a3bcdef57706e1e0b295c9947e0f6 100 extdata/roh_repeated_af.tsv.gz.tbi
28ed1e8166066d0865f7b6d8c2aa6b00b1560125e90f88cdf436f9cab5b3d19d 588 extdata/roh_repeated.vcf.gz
e2618153d61f377365f0db44cfe82b46c924fd7cc6872ad27d7f734c20d96993 106 extdata/roh_repeated.vcf.gz.tbi
e6619242ba14f36132839342144dfdb1444edefd2d68bf20caf271b447b4c05c 377 extdata/roh_single_site.vcf
e5fe3611efc0f31ff722f9d4293ced2cd98ea3bc70628a20db603b52c4e0a048 272 extdata/score_as.vcf
5a0f43d334ba870bd03b97bec411e94a4792fd052c1cb25c57c64da8a5a1b636 279 extdata/score_chrprefix.vcf
483824f41e12a9c6fb44fbdebdd25a1c43e8810089dd8f9ed3874c1bbe523aad 62 extdata/score_columns.tsv
87db2c7af363009996aaa53f149393e381c4c70ba413c1db1316e50d8c211192 883 extdata/score_dosage.vcf
d399830ff996ff0f518bf45988ca1e18ada095936d720d7b9fff14ba2805f1cd 387 extdata/score_gwas_summary.vcf
4e17eddae63047c5cb386239b1afa495be002d8603c6a3e6d940ae37c3b8c436 267 extdata/score_input.vcf
74951ade51db89e5fc5d18910abf2e5032027ade7cb12d7f5a402f550ce796ba 356 extdata/score_missing_ds.vcf
8622ffb75ac5c4e1f8da8798468efb7d1aeaf0cc138c40e233d7aeecfc2ba058 267 extdata/score_missing_gt.vcf
7222b2f936bbf401756c4711cda18c082a41faef6fcb8809121d971b0447ebba 10 extdata/score_regions.txt
97e6e7b909be82f877295f5022f9b3d3c66ea7bdd8545717423d17359271f6a4 39 extdata/score_summaries.list
ec0c504c2763fb9e3129d79ef43ea0099664924ad2028df58fe05fbcc6298908 145 extdata/score_summary_bolt.tsv
8f75f6f8dd5fbe3031e6aebb2337cdd4dbe4f02c8f9a79eb1d3293832fa86d9f 83 extdata/score_summary_CNT.tsv
f2ba72b3cbeb3c355a57d62694f69907eb91ee6430b91f0b4105025726645fd0 103 extdata/score_summary_custom.tsv
4b8fc6104efee24514a9d0fa4c6dfbd008958226cafe5f57cd42a5f5c276f137 15 extdata/score_summary_dir/nested.tsv/ignored.txt
fd60be5ec974d91b628e58cefc464b6e09d821beda4bbe5ea604ef72e298e1e0 14 extdata/score_summary_dir/README.md
5d9245aabb165a54dca58d4cfb7f607836f9756050e8700f9e62824ffd860328 81 extdata/score_summary_dir/score_summary_na.tsv
51e4a9174e121b500c34897bfb469add9abf7c4731f3f2d0f3f67d9a05305350 8 extdata/score_summary_dir/score_summary_na.tsv.csi
8f75f6f8dd5fbe3031e6aebb2337cdd4dbe4f02c8f9a79eb1d3293832fa86d9f 83 extdata/score_summary_dir/score_summary.tsv
51e4a9174e121b500c34897bfb469add9abf7c4731f3f2d0f3f67d9a05305350 8 extdata/score_summary_dir/score_summary.tsv.tbi
cc82dcd3fb8d5c75394d1550c44c5243d78bbce70332a10bc4ade480530ad5d3 96 extdata/score_summary_log10p.tsv
8837958da349f13ab50d6faccb0ec0dae393b73d67f50a3775a497f5baa9701a 149 extdata/score_summary_metal.tsv
b1895f0bc9774f58f7efca84ac44bc912ca416359dd147a0a62692a7102bb41e 83 extdata/score_summary_mismatch.tsv
5d9245aabb165a54dca58d4cfb7f607836f9756050e8700f9e62824ffd860328 81 extdata/score_summary_na.tsv
733e0d3f7b36f9c1492fa19960cfd2342b89fa9a8c8ebd8f4e6659d9f0775042 67 extdata/score_summary_no_snp.tsv
1c4787039fc22296d9b00eaf4a4640ad23f7f13e15b5066eb4c2b2e4fd1e4819 98 extdata/score_summary_or.tsv
d99734d16af751a1b5dd2a41c93b6dd0dcdc53ea3c3d312abf60dd3244010814 123 extdata/score_summary_pgs.tsv
c4c71ce1aca1062dcb9f41e915e47505be5da2d74fbd1c6f1936837b4a3af827 98 extdata/score_summary_plink2.tsv
b659820072c9e9edf6337f2a2c86e9fb0f584730497aa89db7265809bd08c762 167 extdata/score_summary_regenie.tsv
065671ae47c05b920cacc82c11ebaa22f0f3ffb2620463c7455c58bd03858e03 83 extdata/score_summary_rsid.tsv
b629e6dcafd440f4510fa2036c21129997209ac1be5e7d62410a47ea51151661 169 extdata/score_summary_saige.tsv
18be2f5857f2dbe23b812597169a84a7d059c5563833160220a698a956dfbcd2 88 extdata/score_summary_smallp.tsv
bbe41bdf03ca55708f45ffec8e28a4e76de20e313a1184139abc31db2fb0b8a6 149 extdata/score_summary_ssf.tsv
8f75f6f8dd5fbe3031e6aebb2337cdd4dbe4f02c8f9a79eb1d3293832fa86d9f 83 extdata/score_summary.tsv
7222b2f936bbf401756c4711cda18c082a41faef6fcb8809121d971b0447ebba 10 extdata/score_targets.txt
ce2ee6e6221a603c6f8584ae74a7d257e59f13a229e8561479f844ea25c3c433 184 extdata/somalier_brace.bam
2489dea12962ca8de77f5970f1b39f36ff886cffe55d370bb3c437f44dd19bd8 96 extdata/somalier_brace.bam.bai
4b2be9e90fc3b3ae7a08147fab5db67b0787d4007f1e4a094c184e459ba88b63 111 extdata/somalier_brace.fa
e923701c9d030b627e0946dc634c670079e3c8a0001272887aa3e77f20c9458f 24 extdata/somalier_brace.fa.fai
d5b129eb4f7e431e0e8d9b73229fe3e304ed14863d2cb26c055f631eabb34110 1586 extdata/somalier_population_1000g.vcf.gz
15b03d5e7f9a759fae70fc4d3ee0eb71489e5bd242a35f5be9c62c612d48bf62 557 extdata/somalier_sites.vcf
5283d21daddabd1446a65c55f301a5a72dd0f7dbdd68d414bb498f2823ab883a 737 extdata/spec_standard_corrections.vcf
e5e77ccb677952a261de338753b210fc381c0c4344d1e2f050e54ee5ccdcffc2 194 extdata/targets.bed
1f0625eff1cedccafbb7311f75fac89e3e367dc9b4e81a867b6ec647aaa23bfb 9982 extdata/test_vep_snpeff.vcf
5b4d3f2e393b000fd86e76c8896b672c046da84dbbf5facb7a0e6fc7d60a942f 367 extdata/test_vep_tidy.vcf
36dcdf5d7cd1c3ef18d702779c6bccc23e66ff0581a00d5259168715a73b5500 2683 extdata/test_vep_types.vcf
cbb9f5c5ec36d1fe5b69ffd0f1dda45edaa32330337ae146f539c5a9601d7b8e 632295 extdata/test_vep.vcf
ceb84e95ff2a4bed0dd5260708c66e069af0dc2071a4fc5d25557f6b097a43c9 20890 extdata/tidy_chunk_boundary.vcf
8e921c4cbdfc1a1e5c89ffeab5ffa51519f162a045bd33a8dc01344cd5fdff1a 74 extdata/track.bed
a756fe8fffbdf714c4ff1a5bc4a71d68118007e5484971ebe9e84d279fb1c899 16 extdata/unordered.bed
93bda0b0ad4efb45f3aa97672e9030b4c8fbe8440159ef85b2a6f4a6cd83f6f5 4485 extdata/vcf_file.bcf
2b54a2e209a2a04f4d8613a40bdee8c2e698c497fff5172c43fd980971d5a1d0 198 extdata/vcf_file.bcf.csi
b55d2ad9a361b9cc1f13fcf8fcf93fac63597e894076e4cb750909d9d511a5c0 2336 extdata/vcfpp_manifest.tsv
4bef1ec388b66d576959312a93474ab841beac623d703cd4ad72993c8dc95827 43430 function_catalog/functions.md
4df7ab3676dbd06668977fb43ed870f58dc77a51caf6cbfc168162aebc033a05 78863 function_catalog/functions.tsv
927c11ac0fd3ac8702212fdfd325f11f3781653b622ff29586f051df16534e59 267405 function_catalog/functions.yaml
3dddd2526a08a0a7b68c703f87d4c99e9b02e6e21ee82977cc8a4e9d456f666a 234590 function_catalog/reference.md
0ec4235b6d08a39f05e9668c247a9339de6e6f7beaec829bc5db38914918e910 943 help/aliases.rds
7c1a29ea5f7a8da260e347751808ed970e4d1d63562eb2a514817c70acdf6016 4353 help/AnIndex
59b768dc8c14398370ce9daf379a068c8c6deb984f2b1856bf2b0237418e88a2 955 help/paths.rds
dea312ef670b4d449ca0c0661a7bf346afe9050a97b627def1cadcf804463ca5 246925 help/Rduckhts.rdb
78b3052d4fe63a89c4034839c812032bd683929637f7a06035203520ef415553 2165 help/Rduckhts.rdx
b01f3462b81bd7333022218d0e03d2386e11cd117311366f661a28806bdcd8de 15619 html/00Index.html
3d290675266eebeba6efff07db879d699843c80bf428f9e71000e2fc6078f5db 2133 html/R.css
1d4ae25fe608643bb4e8bc0281b17c850f2b54b81b0561a0fe3068fc177cfd78 5282 htslib_config.R
068161b58a4ab7a2c1a1468896d3cac641ee6a8f72e9aaabd144a683fad06fb6 5448 htslib_config.R.in
eb1faaf17ac2e318e71409f6413422f4f8b21cfd7c2b758689d6b10281ff72e7 7089 INDEX
e02c742c9c243d1d64c696c3ea9d7798585fc33cf39781cc39c3238b47515e9f 50312 libs/Rduckhts.so
5b0c975d6d21b7b4b92aaadff96f06e8e09f508c50237b694bb46d82b452c0d2 640 libs/Rduckhts.so.dSYM/Contents/Info.plist
6109fa83a946c0f839d37c29434bf3ad26d343105b63e8c003a386a84eeef552 10222 libs/Rduckhts.so.dSYM/Contents/Resources/DWARF/Rduckhts.so
a1f49fad815f248ea51fe3b7e3bc8f770458d4e42def4637d0c71b2b493811fb 421 libs/Rduckhts.so.dSYM/Contents/Resources/Relocations/aarch64/Rduckhts.so.yml
b4f074bc0f45cfe56d976c0d67a1453067f4b34693828ed02d674a6641b3e332 123 Meta/features.rds
66c2a3d63cda8d6935befb81dd92768d03ea278ff04e8e5ff4409b84e569788e 2995 Meta/hsearch.rds
2c70e220f45bfb0119f6fa7651fd11c3c9d1e6873208c7e8a38c29cc499024f0 1464 Meta/links.rds
802a1257ba3b81f7a1c9846b99bb7cb150aa5b47d7e1d5817d0f4e9562385ddc 1121 Meta/nsInfo.rds
697cbe02a0b3ed61261a09bb8a58ef4f79c4d0fe5a93debbbeb3f1a7b21238ab 2124 Meta/package.rds
7859c0a984ad10ed23ecf8d382036ee38e54c01e82faa4ea6b6d9e624223b521 3453 Meta/Rd.rds
2ff9c42eea895f0c09d56b74322e9ee89b533baed3a98806ca6977d2abcf848f 3126 NAMESPACE
ecf7ac9f2a02aacdc032b4f856c073a1508203de67116ee1e55854421876c3de 116308 NEWS.md
e77ca50de49b903993394bcc5f2813546ddb038d2f69c2ec04efff3770c687dd 12139 patches/duckdb_capi_strict_prototypes.patch
570ca456b280cdeb201ef5ebdf22dc8f80092e2c0c68e33c7f73340e420f3759 1058 R/Rduckhts
7cdbd9b9ffe101d0122c3f40e7fcbf33b2182064dbf2aaaa5a9cf52224b73b83 276855 R/Rduckhts.rdb
33f21734fc10a7be21324255b29fb1df320fe4fef0aedcde48abcc02ba6ca52d 2949 R/Rduckhts.rdx
e734bd5d68ad41cd17fd51b7b2dda48aae5f1d5809e927441503655cf0ffb1d4 10815 tinytest/test_ancestry_contracts.R
bedcc3211b5fecf4685ef8adab54d9d61126407a819890225a9c55ade9c9b183 40720 tinytest/test_ancestry.R
25f61e7cc53e572bac138e32f5906659a30f522e33a3a0e9fae23bba978dd62f 3214 tinytest/test_bam_bed_coverage.R
e042c4cae8a363b7d84241f36bcfed801bd831e74a516b0aee838511e9fccd80 5493 tinytest/test_bam_file_offset.R
eae765deb93e7537749a75033d8cc50e6af80b3bf152a17fd80030abf86fa6e8 3964 tinytest/test_bam_mate_overlap_counts.R
9925539547d42b7d379999f25b16eda072b8f72b74d6c721593fc0f072559818 2440 tinytest/test_bam_materialize.R
e19a7b87985388432333af893647eba1fde82d8a0c95a0dec3fca4cec5e25aa6 3288 tinytest/test_bam_mismatch_counts.R
0a289793fe24a9432e851db8bacd2f61ccc11159c13e2a5d35d3cb2d93f598b1 7702 tinytest/test_bam_scan.R
26dfb543a44bff67537c96b8020739ad11d82a9640421d6a676d14f8753fb1b5 22213 tinytest/test_basic.R
0f2fa49b07af9c18f2f33ba9b242225c309a57aa19acc823611618341fc68e85 2906 tinytest/test_bcf_file_offset.R
965518b43876c21d481b273d56579ea17ccc6477d7fa707369d8d11e6c9ce3fd 8580 tinytest/test_bcf_regression.R
3ebc17ebf22d3e1d5555d76289bba866ec9e9fe0ccecba7b3112c73239d184f2 22630 tinytest/test_bcf.R
47b5fe31ebb6e1902e2df7495324d90074a64fc0bf8d0381e90f8abb80befb6a 19340 tinytest/test_bcftools_norm.R
e65e51a7f63d94db19b565d642abf0970e2ea04acb79af4d8f1c3619a4675ade 5166 tinytest/test_bigwig.R
ef68dd7b6c562d94c63c4f00d30c36d31cce0c19a2612dde4847270290374808 5047 tinytest/test_bin_counts.R
b41596ee5b7fc46a5d0e017f176e43a85dbc41aee6f040d14b25a93e401fcb16 11440 tinytest/test_cgranges_api.R
6829b32e977e159474d28d707a39c5a97eeba8988fb887f784ddb468de247050 17108 tinytest/test_cigar_utils.R
a46cde0bd540bc1e61d5e1b04be6042bd61dbfc3b7adb967bc8c0c567a4a87b4 5007 tinytest/test_connection.R
f73d606c1498cb20b0fe96dae93c5297eb555f41c37fa65f17851cfef211ca40 6119 tinytest/test_convert_parquet.R
151876cce96a419d7be316e96797f6dafb6c0488c76941bf04bb1e0395fb3b2c 9836 tinytest/test_count_error_fit.R
bc4862d2fd2ed323b58acfe8dfb15b98186ad2dc95c109bf93b45ffea7b6a816 9453 tinytest/test_count_mixture_lowpass.R
9897720285b371f550b0eae8824e3d4f7d2e7978c26ba7b0775d3d516c5260fc 2389 tinytest/test_database_lifetime.R
630017ed51a99acb7806a5e0ed08cf3fe5472b379ed192761bd68d116d026c16 15690 tinytest/test_depth_fraction.R
bb364133b1eae13261380cf5a95d8ec40940b4ae605987f5ca5d28ad47262e7c 5890 tinytest/test_depth_state_model.R
24cfab3352785f6a845fa8d89f5c5551c8cc0017b7cd65e620654db35208a1f3 5265 tinytest/test_fastq_qc.R
ff0c995ee23f0fcd62193fc2bb44eefd9dc44094a0907a6b3f20aec062589128 9887 tinytest/test_genbank.R
5e81c7b7a6458ecec0c6f2fda7e763947f5762e995d843f908c6d8862bce8adf 16534 tinytest/test_geno_sites.R
4317e6a70232f067b8d299d6b8f96049d3332ea4c72b008b42d288c8d9790378 25469 tinytest/test_geno.R
284d613c180a173f3a8a9b0c96897a9d55302b37f9fffa4916cceabe1041e400 3480 tinytest/test_gxf_named_attributes.R
77adad95aee4438c086596d073cb3acfe52e53081afa8b99ea5126abd2e12fb2 7870 tinytest/test_htslib_contract.R
96f18ec8f8cce8a933a42ed705afb92e6010ce17dc641f7dbeed055ca26c9a7a 8214 tinytest/test_indexes_bgzip.R
4e3a3ed780f40b99999b3f09491ce7e9a8deb825a1e3b5ff879d7a8cb8349c64 7467 tinytest/test_insert_size.R
fc735a1379a10874141fc51d33aa3f175f455ce9d04d76faf08b8f78d1110298 16586 tinytest/test_integration.R
e78655dbdba4795039d8534baceaa88fdf02b7a1a757abb62bb5fa0cecb4980b 6670 tinytest/test_intervals.R
27b8869fefb303ef7682156e0fc522db517e3fd81caeb4cc88b78a8cb280668a 2744 tinytest/test_liftover_stress.R
94f46462f18076994f90cdac298f5a8d0e9af7aaff9c19575e039ece955f301b 23586 tinytest/test_liftover.R
e793a2df79d2f21a9f9bb3f50eb962004241b3ef6a242dd895b51da430df66be 4682 tinytest/test_macro_installation.R
0ae2a5f8c05086d3e29b6dc18939c9e159c70d098a249025aa724bbd376d2678 17841 tinytest/test_mosdepth.R
24cc29b101a574776774fd5b2ddbae05f3428ab44c242d8d71b3cfe1b1088c80 5852 tinytest/test_multi.R
fe184116aa2d892bba687cfd1c9adc3d9b2ed94ef02acfcb82e443e186b4e187 1213 tinytest/test_munge_threading.R
db65ea0e1ea7c8e3bbccc2ec1a112c2e450988e5b150938c50d09757b7d53ca2 12624 tinytest/test_munge.R
27aa897385944be78ac90288b90a6d7c7e8845cfb9aa886dd41d09cf40ee7b3d 235 tinytest/test_native_marker.R
e62e4e24a8bf8890098d9920b608c861ef052cef704268b5bf12adc598dabf73 2369 tinytest/test_parallel_empty_contigs.R
8078961bf1124725f5f9d3ec25e51b09b1f8ede676f038ce01cdc8e0f24162e3 2738 tinytest/test_pileup.R
a1943ec9e5d19e38fcfab96a94f6c4dfc21e81aaa615bf2b31d7ddf911d89da9 2825 tinytest/test_quality_encoding.R
b5873d05ef5a581256616018535b78c50378473835b62e93411eee272fd6f20e 2624 tinytest/test_reference_cache.R
c9cb79405f779add21ef50346b41f4336a3090cc0d499022ca7d9e8ca50abe0e 3704 tinytest/test_region_lists.R
cc7bb20f51f1277fc998ce315178976dd1f33d968ffe567accaced1b723b34e5 25648 tinytest/test_roh.R
2927f3ce2968f052db07ba9a670337a5830b0465411d8aa9e93847b48e77853a 2846 tinytest/test_samtools_idxstats.R
93d2578a2423f783e1e8cd8d77f1b3f512d4f1f2b720b169e069761e1fd42e6d 19265 tinytest/test_score.R
21dc028f5115dc909ff4554d0c7c3ecd0e7ff7a3cd91bf16d11ef4b77b8b6d12 22759 tinytest/test_seq_ops.R
4a110cef9e2a1a6e0cf6534329b3d4458b2e3717185ad6fc25af6cc0d6afeb41 19600 tinytest/test_somalier_extraction.R
a5dc95d92a52d47cff143b7ac51e63dee02c7377e16c494aa91987c512128211 16526 tinytest/test_somalier_find_sites.R
caceb8d31918822119ac86be41aaba3bb734ad6d8ef5470bcf00ff2e663e478b 5313 tinytest/test_somalier_sex.R
bfd76c4e23b67447025684b181c33daf1697401457be85110dc87a43c3f62c21 28158 tinytest/test_somalier.R
3850a373e3ee8fddb81322420916f1de4ed032d9a121a58386fc6abc61325fa7 1831 tinytest/test_sql_quoting.R
a50a9cbe53720b6a7b2e823dcbc2ae06c3629965fa0fad6cbd08b73dad057666 5544 tinytest/test_table_overwrite_failure.R
70f37bb99e2e031fc5d3ab0934c4484ece2cf32531a5f216667aed3a8a76fa59 12853 tinytest/test_type_mappings.R
89debaa22aa31fb86dd0cf35d32430189887c32e202c037836f4dba8459f0ed6 6437 tinytest/test_variantkey_regionkey.R
b854f4d4c00d5830c97cef3ff1189706862f5d8f1d70a04dc73bce27289dcbc5 47 WORDLIST
