Package: SCORPION
Type: Package
Title: Single Cell Oriented Reconstruction of PANDA Individually
        Optimized Networks
Version: 1.3.3
Authors@R: c(person("Daniel","Osorio", email = "daniecos@uio.no", role = c("aut","cre"), comment = c(ORCID = "0000-0003-4424-8422")),
  person("Marieke L.","Kuijjer", email = "marieke.kuijjer@ncmbm.uio.no", role = c("aut"), comment = c(ORCID = "0000-0001-6280-3130")))
Description: Constructs cell-type-specific gene regulatory networks from single-cell RNA-sequencing data. The method implements the SCORPION algorithm, which first aggregates individual cells into super-cells and then applies PANDA (Passing Attributes between Networks for Data Assimilation) to infer transcription factor-target regulatory relationships. It also provides statistical methods for differential edge analysis.
License: GPL-3
Encoding: UTF-8
LazyData: true
Depends: R (>= 3.5.0)
Imports: cli, methods, irlba, igraph, RANN, Matrix, pbapply, dplyr,
        furrr, future
Suggests: RhpcBLASctl, testthat, mori, circlize, biomaRt, fgsea
URL: https://github.com/kuijjerlab/SCORPION
BugReports: https://github.com/kuijjerlab/SCORPION/issues
RoxygenNote: 7.3.3
NeedsCompilation: no
Packaged: 2026-09-02 14:32:26 UTC; dcosorioh
Author: Daniel Osorio [aut, cre] (ORCID:
    <https://orcid.org/0000-0003-4424-8422>),
  Marieke L. Kuijjer [aut] (ORCID:
    <https://orcid.org/0000-0001-6280-3130>)
Maintainer: Daniel Osorio <daniecos@uio.no>
Repository: CRAN
Date/Publication: 2026-09-02 14:50:02 UTC
Built: R 4.6.1; ; 2026-09-02 17:36:13 UTC; unix
