# Simplified Vertex-Wise Analyses of Whole-Brain and Subcortical Surface

## Documentation for package ‘VertexWiseR’ version 1.5.3

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

atlas_to_surf | Atlas to surface
CAT12vextract | CAT12vextract
decode_surf_data | Decode surface data
DTSERIESvextract | DTSERIESvextract
edgelist-class | Edge list object
edgelist_hip | List of edges for the hippocampal template
fs5_to_fs6 | fsaverage5 to fsaverage6
fs5_to_fslr | fsaverage5 to fslr
fs6_to_fs5 | fsaverage6 to fsaverage5
fs6_to_fs5_map | fsaverage6 template object for nearest neighbor conversion in fs6_to_fs5()
FSLRvextract | FSLRvextract
fslr_to_fs5 | fslr to fsaverage5
fslr_to_fs5_map | fslr template object for nearest neighbor conversion in fslr_to_fs5()
fs_stats | fs_stats()
getting_started | Getting started with tutorials
HIPvextract | HIPvextract
hip_points_cells | points and cells data required to build the hippocampus surface template
MNIsurface-class | MNI surface map object
plot_overlay_surf | Surface overlay plotter
plot_surf | Surface plotter
plot_surf3d | 3D Surface plotter
RFT_vertex_analysis | Vertex-wise analysis with random field theory cluster correction
ROImap-class | Region-of-Interest mapping object
ROImap_fs5 | Atlas parcellations of fsaverage5
ROImap_fs6 | Atlas parcellations of fsaverage6
ROImap_fslr32k | Atlas parcellations of FS_LR32k
ROImap_hip | Atlas parcellations of the hippocampus (CITI168)
SCMvextract | SCMvextract
smooth_surf | Smooth surface
SURFvextract | SURFvextract
surf_to_atlas | Surface to atlas
surf_to_vol | Surface to volume
TFCE_threshold | Thresholding TFCE output
TFCE_vertex_analysis | Vertex-wise analysis with threshold-free cluster enhancement (fixed effect)
TFCE_vertex_analysis_mixed | Vertex-wise analysis with threshold-free cluster enhancement (mixed effect)
VWRfirstrun | VertexWiseR system requirements installation