# Gene Locus Plot with Gene Annotations

## Documentation for package ‘locuszoomr’ version 1.0.0

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

eqtl_plot | Locus eQTL plot
genetracks | Plot gene tracks
genetracks_grob | Create gene tracks grob
genetrack_ly | Gene tracks using 'plotly'
gg_addgenes | Add gene tracks to a ggplot2 plot
gg_genetracks | Plot gene tracks
gg_scatter | Locus scatter plot using ggplot2
line_plot | Locus line plot
link_eqtl | Obtain GTEx eQTL data via LDlinkR
link_LD | Obtain LD at a locus from LDlink
link_recomb | Query UCSC for Recombination data
locus | Create locus object for plotting
locus_ggplot | Locus plot using ggplot2
locus_plot | Locus plot
locus_plotly | Locus plotly
multi_layout | Layout multiple locus plots
overlay_plot | Plot overlaying eQTL and GWAS data
quick_peak | Fast peak finder in GWAS data
scatter_plot | Locus scatter plot
scatter_plotly | Locus scatter plotly
set_layers | Set up a column of multiple plots
SLE_gwas_sub | SLE GWAS data subset
zoom | Zoom browser to explore GWAS/eQTL results