# Niche-model-Based Species Identification

## Documentation for package ‘NicheBarcoding’ version 1.0

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package README

## Help Pages

bak.vir | bak.vir data set, a class of matrix.
en.vir | en.vir data set, a class of RasterBrick.
extractSpeInfo | Extraction of taxon/species and distribution information
LappetMoths | LappetMoths data set, a list of 8 data frames.
monophyly.prop | Calculate the proportion of monophyletic group on a tree
NBSI | Niche-model-Based Species Identification (NBSI)
NBSI2 | Niche-model-Based Species Identification (NBSI) for a prior analysis
niche.Model.Build | Ecological niche model building using the randomForest classifier
niche.PCA | Principal component analysis of ecological niche among unknown species and the potential species to which they may belong
pseudo.absent.points | Generation of pseudo absent points for niche model building
pseudo.present.points | Generation of pseudo present points for niche model building
spe.mantel.test | Mantel test between interspecific pairwise genetic distance and ecological distance