# Quantitative Polymerase Chain Reaction (qPCR) Data Mining and Machine Learning Toolkit as Described in Burdukiewicz (2022) <doi:10.21105/Joss.04407>

## Documentation for package ‘PCRedux’ version 1.2-1

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

PCRedux-package | PCRedux - quantitative PCR Data Mining and Machine Learning Toolkit
armor | armor: fetch errors gently
autocorrelation_test | A function to test for autocorrelation of amplification curve data from a quantitative PCR experiment
data_sample | The datasets implemented in PCRedux
decision_modus | A function to get a decision (modus) from a vector of classes
decision_res_kbqPCR | The datasets implemented in PCRedux
earlyreg | A function to calculate the slope and intercept of an amplification curve data from a quantitative PCR experiment.
encu | A function to calculate numerous features from amplification curve data from a quantitative PCR experiment.
head2tailratio | A function to calculate to head to tail ratio of amplification curve data from a quantitative PCR experiment
hookreg | A function to calculate the slope and intercept of an amplification curve data from a quantitative PCR experiment at the end of the data stream.
hookregNL | hookregNL - A function to calculate the slope of amplification curves in the tail region
humanrater2 | Human Rater 2.0
kbqPCR | The datasets implemented in PCRedux
l4 | PCRedux - quantitative PCR Data Mining and Machine Learning Toolkit
mblrr | A function to perform a Local Robust Regression in Ranges defined by Qunantile-filtering
PCRedux | PCRedux - quantitative PCR Data Mining and Machine Learning Toolkit
pcrfit_single | pcrfit_single - A function to extract features from an amplification curve
performeR | Performance analysis for binary classification
qPCR2fdata | A helper function to convert amplification curve data to the fdata format.
RAS002 | The datasets implemented in PCRedux
RAS002_decisions | The datasets implemented in PCRedux
run_PCRedux | PCRedux app
tReem | A function to Group Amplification Curves According to their Shape
winklR | winklR: A function to calculate the angle based on the first and the second derivative of an amplification curve data from a quantitative PCR experiment.