Package: transitiontrees
Type: Package
Title: Transition Trajectories and Dynamics of Variable-Length Pathways
        or Sequences
Version: 0.1.2
Authors@R: c(
    person(given = "Mohammed",
           family = "Saqr",
           email = "saqr@saqr.me",
           role = c("aut", "cre", "cph")),
    person(given = "Sonsoles",
           family = "López-Pernas",
           email = "sonsoles.lopez@uef.fi",
           role = "aut"))
Description: Analyzes transition trajectories in event, sequence, and
    ordered data, focusing on how states follow one another, how far
    processes unfold, and where pathways branch or converge. Trajectories
    are modeled using variable-order prediction suffix trees (Ron,
    Singer, & Tishby, 1996) <doi:10.1023/A:1026490906255>, implemented in
    both frequency-based and prediction-based forms. The framework
    includes multiple pruning, validation, and smoothing techniques to
    ensure model robustness. Visualization options include transition
    trees, radial sunburst diagrams, transition heatmaps, and forward
    trajectory trees.
License: GPL-3
URL: https://github.com/mohsaqr/transitiontrees
BugReports: https://github.com/mohsaqr/transitiontrees/issues
Encoding: UTF-8
Language: en-US
LazyData: true
LazyDataCompression: xz
Depends: R (>= 4.1)
Imports: ggplot2, grDevices, stats, utils
Suggests: testthat (>= 3.0.0), knitr, rmarkdown, visNetwork, tna,
        Nestimate
VignetteBuilder: knitr
Config/testthat/edition: 3
RoxygenNote: 7.3.3
NeedsCompilation: no
Packaged: 2026-06-11 10:37:17 UTC; mohammedsaqr
Author: Mohammed Saqr [aut, cre, cph],
  Sonsoles López-Pernas [aut]
Maintainer: Mohammed Saqr <saqr@saqr.me>
Repository: CRAN
Date/Publication: 2026-06-18 17:10:08 UTC
Built: R 4.7.0; ; 2026-07-19 02:45:14 UTC; windows
