Package: UKBAnalytica
Title: UK Biobank Data Processing and Survival Analysis Toolkit
Version: 1.0.0
Authors@R: person(given = "Nan", family = "He", email = "hinna01@163.com", role = c("aut", "cre"), comment = c(ORCID = "0009-0008-6932-3867"))
Author: Nan He [aut, cre] (ORCID: <https://orcid.org/0009-0008-6932-3867>)
Maintainer: Nan He <hinna01@163.com>
Description: Provides an integrated workflow for UK Biobank Research
    Analysis Platform (RAP) hosted and RAP-generated analysis tables. The
    package supports RAP phenotype extraction planning, predefined variable
    sets and disease definitions, standardized baseline preprocessing,
    multi-source endpoint ascertainment, prevalent and incident case
    classification, survival-ready cohort construction, regression, multiple
    imputation, propensity score analysis, mediation analysis, subgroup and
    sensitivity analyses, machine learning, proteomics enrichment and
    protein-protein interaction analysis, and publication-oriented
    visualization. The package workflow is described in He et al. (2026)
    <doi:10.64898/2026.06.19.26356057>.
License: MIT + file LICENSE
Encoding: UTF-8
RoxygenNote: 7.3.3
URL: https://github.com/Hinna0818/UKBAnalytica,
        https://hinna0818.github.io/UKBAnalytica/
BugReports: https://github.com/Hinna0818/UKBAnalytica/issues
Imports: data.table, stringi, ggplot2, rlang, scales, survival, pROC,
        tableone, mice, mitools, sandwich, lmtest, MASS, mgcv, xml2,
        igraph
Suggests: testthat, rms, gbm, cobalt, survminer, MatchIt, regmedint,
        ranger, xgboost, glmnet, e1071, nnet, rpart, Boruta,
        rBayesianOptimization, randomForestSRC, clusterProfiler,
        AnnotationDbi, org.Hs.eg.db, qs2
Config/testthat/edition: 3
Config/Needs/bioc: TRUE
Depends: R (>= 4.0)
LazyData: true
NeedsCompilation: no
Packaged: 2026-06-24 04:06:19 UTC; hinna
Repository: CRAN
Date/Publication: 2026-06-30 11:00:07 UTC
Built: R 4.5.3; ; 2026-07-08 05:47:23 UTC; windows
