Topological Correlation Coefficient

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Documentation for package ‘topcc’ version 1.2

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autotopcor Auto Topological Correlation Coefficient (ATCC)
autotopcortest Significance Test for Auto Topological Correlation Coefficient
indextest indextest
local_shuffle Generate local random permutation surrogates for a time series
paralleltopcortest Significance test for TCC using shuffling (parallel version, with optional seed)
sliding_window_tcc_test Sliding window TCC significance test using local random permutation surrogates
tcc_local_shuffle Calculate TCC after local random permutation of two time series within a window
tcc_local_shuffle_dist_parallel Generate distribution of TCC values by repeatedly applying local shuffling (parallel)
tdoshuffling Generate surrogates by shuffling (random permutation) of rows and columns.
topcor Calculate Topological correlation Coefficient (TCC) between two TDOs
topcortest Significance test for TCC using shuffling (serial version)