fc24f040c6221a748957efda9f4334e1 *DESCRIPTION
4498da20c44f34a2d1292e86b413d94b *LICENSE
4224e295860109de3859f83aaa2c4cce *NAMESPACE
bdc6eba4ccdc65143ac33ed4369bcb02 *NEWS.md
9565d52fdc7ec72dd563e8942c55cf97 *R/checkers.R
f26df247e097d0a45088329361851f00 *R/data.R
2445d01dc63603b3b488032c54480491 *R/flexstanr.R
034258b6dd0241f34ea5e3221acd6835 *R/globals.R
13894c7be02c69ee9b12f57e909f5820 *R/hestia-package.R
b29040f3e0d2e14dfb96385fd49c2c98 *R/hestia_functions.R
7278888ce5c665d17db921e58b6f6c81 *R/stanmodels.R
c8b29cb1d4bc5bfe28194bb2d195ed8c *README.md
fb9062d3e024f9fe8528745fcc3c7b55 *build/vignette.rds
7e297a31e37e77c201a2bacff2f979eb *configure
2e8215c83ffbad8bdac665bb3c95ee72 *configure.win
e3140d9597bde316e4dc9ed3a6ba68a7 *data/siir.rda
2dd3558112846d3c3cc30a8fd05fec2c *data/siir_res.rda
bfef0eee3746f0dbccfc221d534841dd *data/sir.rda
a67a35f76a1aab9ae96c4e7c34648899 *data/sir_cov.rda
eb93e3f7564be06d3d4ace7d8bdb1908 *data/sir_cov_res.rda
b8715baf595a70b5161c340db97536b9 *data/sir_res.rda
d7a727802893a743afae740af8ceaac7 *inst/CITATION
01b1ef02edab3a04b151585e1d57503a *inst/WORDLIST
c31b8dc7431e50552fc88299a2599c65 *inst/auxillary/simulation.R
4c41009e614901cde012a91ba685a84a *inst/doc/SIR.R
2ed8fe1298434e242f0a721151b3c21c *inst/doc/SIR.Rmd
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244d439eaa416963b930399248318760 *inst/doc/multiple_infection_compartments.R
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ba4c3a49e132ce3c5201cb029ba00137 *inst/doc/parallel-hpc.Rmd
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855c064dbf8deaff96c8dc8a87169109 *inst/include/stan_meta_header.hpp
dd24b4f9d4c2793f0c86cf484eb99fab *inst/stan/hmm.stan
cd94f4bb306d04ae4c21a59fb446e49d *inst/stan/hmm_cov.stan
92f1b2b14dec533aab5c995b88365342 *inst/stan/include/license.stan
37208322daa777e4b318076be8390909 *man/check_init_probs.Rd
16b1eced8edc0e1675ae529f544bcf83 *man/check_models.Rd
d85b8a8002d8306bdbed69574dd31fd7 *man/check_observation.Rd
c0b4533d0980070982c9625a08f37c29 *man/check_rate_dots.Rd
5b44b3c4ef96393f15bee430ec30e91d *man/check_run_data.Rd
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7360f2db075feabf2ee0cc80efe6f2f8 *man/check_to_from.Rd
db1e60bb337424f62da0dbf7ba1635d2 *man/get_transmission_details.Rd
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1db5f5dfed44801ba3d369effe9aee3f *man/hestia-package.Rd
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617ec2c31c74232cd8f759dcbe837dcb *man/rename_chains.Rd
db975c019494d160c33827fbe65fe837 *man/run_model.Rd
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c7060d58c169a609aeefc233848f48fd *man/sir_cov.Rd
584a0be4dcbb208fec625f6bd3324613 *man/sir_cov_res.Rd
cb6f0489c473d4960331c41736a1e49b *man/sir_res.Rd
aede5363ae73186bba39fb2128d2ab6d *man/split_check.Rd
b3d527a476ba2badbc5058c7015001c5 *man/to_from_check.Rd
a1e94388846d130cf93826a40e14d607 *man/transmit.Rd
564c40d0e86bb1e58d039ff240e97b9f *src/Makevars
caf785c03c7c9d16bb5597a6fd9214e6 *src/Makevars.win
1fea5dd296ae5355a36f28697510a8b1 *src/RcppExports.cpp
d9f3ff77a5c25aca4eb2efda87eddf12 *src/stanExports_hmm.cc
2779b9f4588c3624b2185a1283cd941f *src/stanExports_hmm.h
916a2f6b037484c9200cb7425450a6bf *src/stanExports_hmm_cov.cc
71bd754a3f8647c8f604a0b7c75c8289 *src/stanExports_hmm_cov.h
6286c40603df000aaae222467ae8cd76 *tests/spelling.R
9dab72b5388caf8efecfb8a6254f4c02 *tests/testthat.R
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f19cfd1854fcdcbbe35b9c44ecd8b2e1 *tests/testthat/test-hestia-smoke.R
4e99c505cacda51c6fe48d4fa2def7b6 *tests/testthat/test-make_infection_model.R
857ecba93cf82d4706b538f54cc7d4a6 *tests/testthat/test-make_observation_model.R
53bd7a2a7140a18bb54866e54ac32aa6 *tests/testthat/test-progress.R
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391e39370ab73a8c6f2a52f0bf57bbed *tests/testthat/test-transmit.R
2ed8fe1298434e242f0a721151b3c21c *vignettes/SIR.Rmd
0ee16136ce746fcaee839848ccd53082 *vignettes/multiple_infection_compartments.Rmd
ba4c3a49e132ce3c5201cb029ba00137 *vignettes/parallel-hpc.Rmd
