Last updated on 2025-12-19 11:49:49 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.2.0 | 5.92 | 554.62 | 560.54 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.2.0 | 5.04 | 367.16 | 372.20 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.2.0 | 13.00 | 979.39 | 992.39 | ERROR | |
| r-devel-linux-x86_64-fedora-gcc | 0.2.0 | 13.00 | 996.76 | 1009.76 | ERROR | |
| r-devel-windows-x86_64 | 0.2.0 | 7.00 | 875.00 | 882.00 | WARN | |
| r-patched-linux-x86_64 | 0.2.0 | 7.90 | 543.48 | 551.38 | OK | |
| r-release-linux-x86_64 | 0.2.0 | 6.75 | 542.40 | 549.15 | OK | |
| r-release-macos-arm64 | 0.2.0 | WARN | ||||
| r-release-macos-x86_64 | 0.2.0 | 5.00 | 546.00 | 551.00 | OK | |
| r-release-windows-x86_64 | 0.2.0 | 9.00 | 557.00 | 566.00 | OK | |
| r-oldrel-macos-arm64 | 0.2.0 | WARN | ||||
| r-oldrel-macos-x86_64 | 0.2.0 | 5.00 | 508.00 | 513.00 | OK | |
| r-oldrel-windows-x86_64 | 0.2.0 | 12.00 | 775.00 | 787.00 | OK |
Version: 0.2.0
Check: examples
Result: ERROR
Running examples in ‘DataSimilarity-Ex.R’ failed
The error most likely occurred in:
> ### Name: DataSimilarity
> ### Title: Dataset Similarity
> ### Aliases: DataSimilarity
>
> ### ** Examples
>
> # Workflow for using the DataSimilarity package:
> # Prepare data example: comparing species in iris dataset
> data("iris")
> iris.split <- split(iris[, -5], iris$Species)
> setosa <- iris.split$setosa
> versicolor <- iris.split$versicolor
> virginica <- iris.split$virginica
>
> # 1. Find appropriate methods that can be used to compare 3 numeric datasets:
> findSimilarityMethod(Numeric = TRUE, Multiple.Samples = TRUE)
[1] "BallDivergence" "C2ST" "DISCOB" "DISCOF"
[5] "Energy" "FStest" "KMD" "MMCM"
[9] "MW" "Petrie" "RItest" "SC"
>
> # get more information
> findSimilarityMethod(Numeric = TRUE, Multiple.Samples = TRUE, only.names = FALSE)
Method Implementation Target.Inclusion
2 Pan et al. (2018) BallDivergence Unfulfilled
7 C2ST (Lopez-Paz and Oquab, 2017) C2ST Unfulfilled
15 DISCO (Rizzo and Székely, 2010) DISCOB Unfulfilled
16 DISCO (Rizzo and Székely, 2010) DISCOF Unfulfilled
18 Energy statistic (Zech and Aslan, 2003) Energy Unfulfilled
22 Paul, De and Ghosh (2022) FStest Unfulfilled
27 KMD (Huang and Sen, 2023) KMD Unfulfilled
29 Mukherjee et al. (2022) MMCM Unfulfilled
31 Mukhopadhyay and Wang (2020) MW Unfulfilled
34 Petrie (2016) Petrie Unfulfilled
35 Paul, De and Ghosh (2022) RItest Unfulfilled
37 Song and Chen (2022) SC Unfulfilled
Numeric Categorical Unequal.Sample.Sizes
2 Fulfilled Unfulfilled Fulfilled
7 Fulfilled Conditionally Fulfilled Fulfilled
15 Fulfilled Unfulfilled Fulfilled
16 Fulfilled Unfulfilled Fulfilled
18 Fulfilled Unfulfilled Fulfilled
22 Fulfilled Unfulfilled Fulfilled
27 Fulfilled Unfulfilled Fulfilled
29 Fulfilled Fulfilled Fulfilled
31 Fulfilled Unfulfilled Fulfilled
34 Fulfilled Fulfilled Fulfilled
35 Fulfilled Unfulfilled Fulfilled
37 Fulfilled Unfulfilled Fulfilled
p.Larger.N Multiple.Samples Without.training No.assumptions
2 Fulfilled Fulfilled Fulfilled Fulfilled
7 Conditionally Fulfilled Fulfilled Unfulfilled Unfulfilled
15 Fulfilled Fulfilled Fulfilled Unfulfilled
16 Fulfilled Fulfilled Fulfilled Unfulfilled
18 Fulfilled Fulfilled Fulfilled Unfulfilled
22 Fulfilled Fulfilled Fulfilled Fulfilled
27 Fulfilled Fulfilled Fulfilled Fulfilled
29 Fulfilled Fulfilled Fulfilled Unfulfilled
31 Fulfilled Fulfilled Fulfilled Unfulfilled
34 Fulfilled Fulfilled Fulfilled Unfulfilled
35 Fulfilled Fulfilled Fulfilled Fulfilled
37 Fulfilled Fulfilled Fulfilled Unfulfilled
No.parameters Implemented Complexity Interpretable.units
2 Unfulfilled Fulfilled <NA> Unfulfilled
7 Unfulfilled Fulfilled <NA> Fulfilled
15 Unfulfilled Fulfilled O(N^2) Unfulfilled
16 Unfulfilled Fulfilled O(N^2) Unfulfilled
18 Fulfilled Fulfilled O(N^2) Unfulfilled
22 Unfulfilled Fulfilled <NA> Unfulfilled
27 Unfulfilled Fulfilled O(KN log N) Unfulfilled
29 Fulfilled Fulfilled <NA> Unfulfilled
31 Unfulfilled Fulfilled <NA> Unfulfilled
34 Unfulfilled Fulfilled O(N^2 log N),O(N^3),O(N log N) Fulfilled
35 Unfulfilled Fulfilled <NA> Unfulfilled
37 Unfulfilled Fulfilled <NA> Unfulfilled
Lower.bound Upper.bound Rotation.invariant Location.change.invariant
2 0 <NA> <NA> <NA>
7 0 1 Conditionally Fulfilled Conditionally Fulfilled
15 0 Unfulfilled Fulfilled Fulfilled
16 0 Unfulfilled Fulfilled Fulfilled
18 0 Unfulfilled Fulfilled Fulfilled
22 0 1 Conditionally Fulfilled Conditionally Fulfilled
27 0 1 Fulfilled Fulfilled
29 0 <NA> Fulfilled Fulfilled
31 0 <NA> <NA> <NA>
34 Fulfilled Fulfilled Fulfilled Fulfilled
35 0 1 Conditionally Fulfilled Conditionally Fulfilled
37 0 <NA> Fulfilled Fulfilled
Homogeneous.scale.invariant Positive.definite Symmetric Triangle.inequality
2 <NA> Fulfilled Fulfilled Unfulfilled
7 Conditionally Fulfilled <NA> Fulfilled <NA>
15 Unfulfilled <NA> Fulfilled <NA>
16 Unfulfilled <NA> Fulfilled <NA>
18 Unfulfilled Fulfilled Fulfilled Fulfilled
22 <NA> <NA> Fulfilled <NA>
27 Fulfilled Fulfilled Fulfilled <NA>
29 Fulfilled <NA> Fulfilled <NA>
31 <NA> <NA> Fulfilled <NA>
34 Fulfilled <NA> Fulfilled <NA>
35 <NA> <NA> Fulfilled <NA>
37 Fulfilled <NA> Fulfilled <NA>
Consistency.N Consistency.p Number.Fulfilled
2 Fulfilled <NA> 11
7 Conditionally Fulfilled <NA> 7
15 Fulfilled <NA> 11
16 Fulfilled <NA> 11
18 Fulfilled Conditionally Fulfilled 14
22 <NA> Fulfilled 11
27 Fulfilled <NA> 16
29 Fulfilled <NA> 14
31 <NA> <NA> 9
34 <NA> <NA> 13
35 <NA> Fulfilled 11
37 Fulfilled <NA> 12
Number.Cond.Fulfilled Number.Unfulfilled Number.NA
2 0 5 5
7 6 5 3
15 0 7 3
16 0 7 3
18 1 6 0
22 3 3 4
27 0 3 2
29 0 3 4
31 0 4 8
34 0 4 4
35 3 3 4
37 0 5 4
Class
2 Testing approach
7 Method based on binary classification
15 Comparison based on inter-point distances
16 Comparison based on inter-point distances
18 Comparison based on inter-point distances
22 Testing approach
27 Kernel-based
29 Graph-based
31 Graph-based
34 Graph-based
35 Testing approach
37 Graph-based
Subclass
2 Testing approach
7 Method based on binary classification
15 Comparison based on inter-point distances
16 Comparison based on inter-point distances
18 Comparison based on inter-point distances
22 Testing approach
27 Kernel-based
29 Graph-based
31 Graph-based
34 Graph-based
35 Testing approach
37 Graph-based
>
> # 2. Choose a method and apply it:
> # All suitable methods
> possible.methds <- findSimilarityMethod(Numeric = TRUE, Multiple.Samples = TRUE,
+ only.names = FALSE)
> # Select, e.g., method with highest number of fulfilled criteria
> possible.methds$Implementation[which.max(possible.methds$Number.Fulfilled)]
[1] "KMD"
>
> set.seed(1234)
> if(requireNamespace("KMD")) {
+ DataSimilarity(setosa, versicolor, virginica, method = "KMD")
+ }
Loading required namespace: KMD
Error in `[.data.table`(df_X, , `:=`(gp_size, length(id)), by = "group") :
attempt access index 2/2 in VECTOR_ELT
Calls: DataSimilarity ... <Anonymous> -> <Anonymous> -> get_neighbors -> [ -> [.data.table
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 0.2.0
Check: for unstated dependencies in ‘tests’
Result: WARN
Warning: unable to access index for repository https://bioconductor.statistik.tu-dortmund.de/cran/src/contrib:
cannot open URL 'https://bioconductor.statistik.tu-dortmund.de/cran/src/contrib/PACKAGES'
Warning: unable to access index for repository https://bioconductor.statistik.tu-dortmund.de/packages/3.22/bioc/src/contrib:
cannot open URL 'https://bioconductor.statistik.tu-dortmund.de/packages/3.22/bioc/src/contrib/PACKAGES'
Warning: unable to access index for repository https://bioconductor.statistik.tu-dortmund.de/packages/3.22/data/annotation/src/contrib:
cannot open URL 'https://bioconductor.statistik.tu-dortmund.de/packages/3.22/data/annotation/src/contrib/PACKAGES'
Warning: unable to access index for repository https://bioconductor.statistik.tu-dortmund.de/packages/3.22/data/experiment/src/contrib:
cannot open URL 'https://bioconductor.statistik.tu-dortmund.de/packages/3.22/data/experiment/src/contrib/PACKAGES'
'library' or 'require' call not declared from: 'rmvnorm'
Flavor: r-devel-windows-x86_64
Version: 0.2.0
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
--- re-building ‘Details.Rnw’ using Sweave
Warning in initialize(value, ...) :
There must be an even number of elements
Adding a ghost value
Loading required package: ggplot2
Loading required package: lattice
Error: processing vignette 'Details.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'Details.tex' failed.
LaTeX errors:
!pdfTeX error: pdflatex (file bbm9): Font bbm9 at 600 not found
==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘Details.Rnw’
--- re-building ‘GettingStarted.Rnw’ using Sweave
Warning in initialize(value, ...) :
There must be an even number of elements
Adding a ghost value
Warning in initialize(value, ...) :
There must be an even number of elements
Adding a ghost value
Warning in initialize(value, ...) :
There must be an even number of elements
Adding a ghost value
Loading required package: ggplot2
Loading required package: lattice
--- finished re-building ‘GettingStarted.Rnw’
SUMMARY: processing the following file failed:
‘Details.Rnw’
Error: Vignette re-building failed.
Execution halted
Flavors: r-release-macos-arm64, r-oldrel-macos-arm64