Last updated on 2025-12-21 17:50:32 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.2.1 | 7.75 | 97.64 | 105.39 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 1.2.1 | 5.34 | 68.91 | 74.25 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.2.1 | 13.00 | 153.11 | 166.11 | ERROR | |
| r-devel-linux-x86_64-fedora-gcc | 1.2.1 | 13.00 | 160.27 | 173.27 | ERROR | |
| r-devel-windows-x86_64 | 1.2.1 | 10.00 | 608.00 | 618.00 | OK | |
| r-patched-linux-x86_64 | 1.2.1 | 7.69 | 663.55 | 671.24 | OK | |
| r-release-linux-x86_64 | 1.2.1 | 7.40 | 664.80 | 672.20 | OK | |
| r-release-macos-arm64 | 1.2.1 | OK | ||||
| r-release-macos-x86_64 | 1.2.1 | 6.00 | 825.00 | 831.00 | OK | |
| r-release-windows-x86_64 | 1.2.1 | 11.00 | 583.00 | 594.00 | OK | |
| r-oldrel-macos-arm64 | 1.2.1 | OK | ||||
| r-oldrel-macos-x86_64 | 1.2.1 | 7.00 | 1017.00 | 1024.00 | OK | |
| r-oldrel-windows-x86_64 | 1.2.1 | 15.00 | 774.00 | 789.00 | OK |
Version: 1.2.1
Check: examples
Result: ERROR
Running examples in ‘daiquiri-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: aggregate_data
> ### Title: Aggregate source data
> ### Aliases: aggregate_data
>
> ### ** Examples
>
> ## Don't show:
> # restrict threads for CRAN compliance
> dt_threads <- data.table::getDTthreads()
> data.table::setDTthreads(1)
> ## End(Don't show)
>
> # load example data into a data.frame
> raw_data <- read_data(
+ system.file("extdata", "example_prescriptions.csv", package = "daiquiri"),
+ delim = ",",
+ col_names = TRUE
+ )
>
> # validate and prepare the data for aggregation
> source_data <- prepare_data(
+ raw_data,
+ field_types = field_types(
+ PrescriptionID = ft_uniqueidentifier(),
+ PrescriptionDate = ft_timepoint(),
+ AdmissionDate = ft_datetime(includes_time = FALSE),
+ Drug = ft_freetext(),
+ Dose = ft_numeric(),
+ DoseUnit = ft_categorical(),
+ PatientID = ft_ignore(),
+ Location = ft_categorical(aggregate_by_each_category = TRUE)
+ ),
+ override_column_names = FALSE,
+ na = c("", "NULL")
+ )
field_types supplied:
PrescriptionID <uniqueidentifier>
PrescriptionDate <timepoint> options: includes_time
AdmissionDate <datetime>
Drug <freetext>
Dose <numeric>
DoseUnit <categorical>
PatientID <ignore>
Location <categorical> options: aggregate_by_each_category
Checking column names against field_types...
Importing source data [raw_data]...
Removing column-specific na values...
Checking data against field_types...
Selecting relevant warnings...
Identifying nonconformant values...
Checking and removing missing timepoints...
Checking for duplicates...
Sorting data...
Loading into source_data structure...
PrescriptionID
PrescriptionDate
AdmissionDate
Drug
Dose
DoseUnit
PatientID
Location
Finished
>
> # aggregate the data
> aggregated_data <- aggregate_data(
+ source_data,
+ aggregation_timeunit = "day"
+ )
Aggregating [] by [day]...
Aggregating overall dataset...
Aggregating each data_field in turn...
1: PrescriptionID
Preparing...
Aggregating character field...
By n
Error in `[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), :
attempt access index 1/1 in VECTOR_ELT
Calls: aggregate_data ... aggregate_and_append_values_simple -> [ -> [.data.table
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 1.2.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [28s/27s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(daiquiri)
>
> test_check("daiquiri")
Saving _problems/test-aggregate_data-64.R
Saving _problems/test-aggregate_data-149.R
Saving _problems/test-aggregate_data-194.R
Saving _problems/test-aggregate_data-223.R
Saving _problems/test-aggregate_data-258.R
Saving _problems/test-aggregate_data-315.R
Saving _problems/test-aggregation_functions-22.R
Saving _problems/test-aggregation_functions-51.R
Saving _problems/test-aggregation_functions-81.R
Saving _problems/test-aggregation_functions-110.R
Saving _problems/test-aggregation_functions-139.R
Saving _problems/test-aggregation_functions-168.R
Saving _problems/test-aggregation_functions-197.R
Saving _problems/test-aggregation_functions-226.R
Saving _problems/test-aggregation_functions-259.R
Saving _problems/test-aggregation_functions-288.R
Saving _problems/test-aggregation_functions-317.R
Saving _problems/test-aggregation_functions-350.R
Saving _problems/test-aggregation_functions-380.R
Saving _problems/test-aggregation_functions-410.R
Saving _problems/test-aggregation_functions-438.R
Saving _problems/test-aggregation_functions-470.R
Saving _problems/test-aggregation_functions-499.R
Saving _problems/test-aggregation_functions-533.R
Saving _problems/test-aggregation_functions-564.R
Saving _problems/test-aggregation_functions-599.R
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Saving _problems/test-aggregation_functions-797.R
Saving _problems/test-aggregation_functions-827.R
Saving _problems/test-aggregation_functions-862.R
Saving _problems/test-aggregation_functions-892.R
Saving _problems/test-aggregation_functions-927.R
Saving _problems/test-aggregation_functions-956.R
Saving _problems/test-aggregation_functions-990.R
Saving _problems/test-aggregation_functions-1019.R
Saving _problems/test-aggregation_functions-1053.R
Saving _problems/test-aggregation_functions-1082.R
Saving _problems/test-aggregation_functions-1116.R
Saving _problems/test-aggregation_functions-1147.R
Saving _problems/test-aggregation_functions-1189.R
Saving _problems/test-main-107.R
Saving _problems/test-main-147.R
Saving _problems/test-main-171.R
Saving _problems/test-main-220.R
Saving _problems/test-main-270.R
Saving _problems/test-main-320.R
Saving _problems/test-main-353.R
Saving _problems/test-reports-83.R
Saving _problems/test-reports-122.R
Saving _problems/test-reports-162.R
Saving _problems/test-reports-192.R
Saving _problems/test-reports-228.R
Saving _problems/test-reports-267.R
Saving _problems/test-reports-304.R
Saving _problems/test-reports-338.R
Saving _problems/test-reports-372.R
Saving _problems/test-reports-411.R
[ FAIL 61 | WARN 0 | SKIP 6 | PASS 181 ]
══ Skipped tests (6) ═══════════════════════════════════════════════════════════
• On CRAN (6): 'test-field_types.R:152:1', 'test-field_types.R:160:1',
'test-field_types.R:178:1', 'test-source_data.R:146:1',
'test-source_data.R:399:1', 'test-source_data.R:439:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-aggregate_data.R:60:3'): aggregate_data() creates aggregate object correctly ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri::aggregate_data(...) at test-aggregate_data.R:60:3
2. └─daiquiri:::aggregate_field(...)
3. └─daiquiri:::aggregate_and_append_values(...)
4. └─daiquiri:::aggregate_and_append_values_simple(...)
5. ├─...[]
6. └─data.table:::`[.data.table`(...)
── Error ('test-aggregate_data.R:146:3'): export_aggregated_data() generates csv files ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri::aggregate_data(...) at test-aggregate_data.R:146:3
2. └─daiquiri:::aggregate_field(...)
3. └─daiquiri:::aggregate_and_append_values(...)
4. └─daiquiri:::aggregate_and_append_values_simple(...)
5. ├─...[]
6. └─data.table:::`[.data.table`(...)
── Error ('test-aggregate_data.R:190:3'): aggregate_combined_fields() removes NAs when rowsumming ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri::aggregate_data(...) at test-aggregate_data.R:190:3
2. └─daiquiri:::aggregate_field(...)
3. └─daiquiri:::aggregate_and_append_values(...)
4. └─daiquiri:::aggregate_and_append_values_simple(...)
5. ├─...[]
6. └─data.table:::`[.data.table`(...)
── Error ('test-aggregate_data.R:219:3'): aggregated_data object prints to console ok ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri::aggregate_data(...) at test-aggregate_data.R:219:3
2. └─daiquiri:::aggregate_field(...)
3. └─daiquiri:::aggregate_and_append_values(...)
4. └─daiquiri:::aggregate_and_append_values_simple(...)
5. ├─...[]
6. └─data.table:::`[.data.table`(...)
── Error ('test-aggregate_data.R:254:3'): aggregated values contain NAs instead of Infs or NaNs ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri::aggregate_data(...) at test-aggregate_data.R:254:3
2. └─daiquiri:::aggregate_field(...)
3. └─daiquiri:::aggregate_and_append_values(...)
4. └─daiquiri:::aggregate_and_append_values_simple(...)
5. ├─...[]
6. └─data.table:::`[.data.table`(...)
── Error ('test-aggregate_data.R:310:3'): aggregate_data() stratifies aggregations correctly ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri::aggregate_data(...) at test-aggregate_data.R:310:3
2. └─daiquiri:::aggregate_field(...)
3. └─daiquiri:::aggregate_and_append_values(...)
4. └─daiquiri:::aggregate_and_append_values_simple(...)
5. ├─...[]
6. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:18:3'): aggregate_and_append_values 'n' works as expected ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:18:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:46:3'): aggregate_and_append_values 'n' works as expected when all values are missing ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:46:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:76:3'): aggregate_and_append_values 'missing_n' works as expected ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:76:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:105:3'): aggregate_and_append_values 'missing_n' works as expected when all values are missing ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:105:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:135:3'): aggregate_and_append_values 'missing_perc' works as expected ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:135:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:163:3'): aggregate_and_append_values 'missing_perc' works as expected when all values are missing ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:163:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:193:3'): aggregate_and_append_values 'nonconformant_n' works as expected for numeric fields ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:193:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:222:3'): aggregate_and_append_values 'nonconformant_n' works as expected for date fields ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:222:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:254:3'): aggregate_and_append_values 'nonconformant_n' works as expected when all values are missing ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:254:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:284:3'): aggregate_and_append_values 'nonconformant_perc' works as expected for numeric fields ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:284:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:313:3'): aggregate_and_append_values 'nonconformant_perc' works as expected for date fields ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:313:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:345:3'): aggregate_and_append_values 'nonconformant_perc' works as expected when all values are missing ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:345:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:375:3'): aggregate_and_append_values 'sum' works as expected ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:375:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:405:3'): aggregate_and_append_values 'nonzero_perc' works as expected ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:405:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:434:3'): aggregate_and_append_values 'distinct' works as expected ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:434:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:464:3'): aggregate_and_append_values 'distinct' works as expected when all values are missing ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:464:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:495:3'): aggregate_and_append_values 'midnight_n' works as expected ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:495:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:527:3'): aggregate_and_append_values 'midnight_n' works as expected when all values are missing ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:527:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:560:3'): aggregate_and_append_values 'midnight_perc' works as expected ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:560:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:593:3'): aggregate_and_append_values 'midnight_perc' works as expected when all values are missing ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:593:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:625:3'): aggregate_and_append_values 'min' works as expected for numeric fields ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:625:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:659:3'): aggregate_and_append_values 'min' works as expected for date fields ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:659:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:692:3'): aggregate_and_append_values 'min' works as expected when all values are missing ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:692:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:724:3'): aggregate_and_append_values 'max' works as expected for numeric fields ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:724:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:758:3'): aggregate_and_append_values 'max' works as expected for date fields ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:758:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:791:3'): aggregate_and_append_values 'max' works as expected when all values are missing ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:791:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:823:3'): aggregate_and_append_values 'mean' works as expected ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:823:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:856:3'): aggregate_and_append_values 'mean' works as expected when all values are missing ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:856:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:888:3'): aggregate_and_append_values 'median' works as expected ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:888:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:921:3'): aggregate_and_append_values 'median' works as expected when all values are missing ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:921:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:952:3'): aggregate_and_append_values 'min_length' works as expected ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:952:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:984:3'): aggregate_and_append_values 'min_length' works as expected when all values are missing ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:984:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:1015:3'): aggregate_and_append_values 'max_length' works as expected ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:1015:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:1047:3'): aggregate_and_append_values 'max_length' works as expected when all values are missing ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:1047:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:1078:3'): aggregate_and_append_values 'mean_length' works as expected ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:1078:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:1110:3'): aggregate_and_append_values 'mean_length' works as expected when all values are missing ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:1110:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:1142:3'): aggregate_and_append_values 'subcat_n' works as expected ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((catname), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:1142:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_subcat(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:1184:3'): aggregate_and_append_values 'subcat_perc' works as expected ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((catname), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:1184:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_subcat(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-main.R:70:3'): daiquiri_report() creates report and returns daiquiri object successfully ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri::daiquiri_report(...) at test-main.R:70:3
2. └─daiquiri::aggregate_data(...)
3. └─daiquiri:::aggregate_field(...)
4. └─daiquiri:::aggregate_and_append_values(...)
5. └─daiquiri:::aggregate_and_append_values_simple(...)
6. ├─...[]
7. └─data.table:::`[.data.table`(...)
── Error ('test-main.R:126:3'): daiquiri_report() works even when column_names contain special chars ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri::daiquiri_report(...) at test-main.R:126:3
2. └─daiquiri::aggregate_data(...)
3. └─daiquiri:::aggregate_field(...)
4. └─daiquiri:::aggregate_and_append_values(...)
5. └─daiquiri:::aggregate_and_append_values_simple(...)
6. ├─...[]
7. └─data.table:::`[.data.table`(...)
── Error ('test-main.R:160:3'): daiquiri_report() gets dataset_description from call if NULL (default) passed in ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri::daiquiri_report(...) at test-main.R:160:3
2. └─daiquiri::aggregate_data(...)
3. └─daiquiri:::aggregate_field(...)
4. └─daiquiri:::aggregate_and_append_values(...)
5. └─daiquiri:::aggregate_and_append_values_simple(...)
6. ├─...[]
7. └─data.table:::`[.data.table`(...)
── Error ('test-main.R:204:3'): daiquiri_object prints to console ok ───────────
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri::daiquiri_report(...) at test-main.R:204:3
2. └─daiquiri::aggregate_data(...)
3. └─daiquiri:::aggregate_field(...)
4. └─daiquiri:::aggregate_and_append_values(...)
5. └─daiquiri:::aggregate_and_append_values_simple(...)
6. ├─...[]
7. └─data.table:::`[.data.table`(...)
── Error ('test-main.R:252:3'): daiquiri_report() creates stratified report without error ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri::daiquiri_report(...) at test-main.R:252:3
2. └─daiquiri::aggregate_data(...)
3. └─daiquiri:::aggregate_field(...)
4. └─daiquiri:::aggregate_and_append_values(...)
5. └─daiquiri:::aggregate_and_append_values_simple(...)
6. ├─...[]
7. └─data.table:::`[.data.table`(...)
── Error ('test-main.R:301:3'): daiquiri_report() creates stratified report without error when strata contain special chars ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri::daiquiri_report(...) at test-main.R:301:3
2. └─daiquiri::aggregate_data(...)
3. └─daiquiri:::aggregate_field(...)
4. └─daiquiri:::aggregate_and_append_values(...)
5. └─daiquiri:::aggregate_and_append_values_simple(...)
6. ├─...[]
7. └─data.table:::`[.data.table`(...)
── Error ('test-main.R:341:3'): daiquiri_report() creates report without error when subcats contain special chars ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri::daiquiri_report(...) at test-main.R:341:3
2. └─daiquiri::aggregate_data(...)
3. └─daiquiri:::aggregate_field(...)
4. └─daiquiri:::aggregate_and_append_values(...)
5. └─daiquiri:::aggregate_and_append_values_simple(...)
6. ├─...[]
7. └─data.table:::`[.data.table`(...)
── Error ('test-reports.R:79:3'): report_data() creates report and returns path successfully ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri::aggregate_data(...) at test-reports.R:79:3
2. └─daiquiri:::aggregate_field(...)
3. └─daiquiri:::aggregate_and_append_values(...)
4. └─daiquiri:::aggregate_and_append_values_simple(...)
5. ├─...[]
6. └─data.table:::`[.data.table`(...)
── Error ('test-reports.R:118:3'): plots still work when all values are missing ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri::aggregate_data(...) at test-reports.R:118:3
2. └─daiquiri:::aggregate_field(...)
3. └─daiquiri:::aggregate_and_append_values(...)
4. └─daiquiri:::aggregate_and_append_values_simple(...)
5. ├─...[]
6. └─data.table:::`[.data.table`(...)
── Error ('test-reports.R:158:3'): plot_timeseries_static() looks how it should ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri::aggregate_data(...) at test-reports.R:158:3
2. └─daiquiri:::aggregate_field(...)
3. └─daiquiri:::aggregate_and_append_values(...)
4. └─daiquiri:::aggregate_and_append_values_simple(...)
5. ├─...[]
6. └─data.table:::`[.data.table`(...)
── Error ('test-reports.R:188:3'): plot_overview_totals_static() looks how it should ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri::aggregate_data(...) at test-reports.R:188:3
2. └─daiquiri:::aggregate_field(...)
3. └─daiquiri:::aggregate_and_append_values(...)
4. └─daiquiri:::aggregate_and_append_values_simple(...)
5. ├─...[]
6. └─data.table:::`[.data.table`(...)
── Error ('test-reports.R:224:3'): plot_overview_heatmap_static() looks how it should ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri::aggregate_data(...) at test-reports.R:224:3
2. └─daiquiri:::aggregate_field(...)
3. └─daiquiri:::aggregate_and_append_values(...)
4. └─daiquiri:::aggregate_and_append_values_simple(...)
5. ├─...[]
6. └─data.table:::`[.data.table`(...)
── Error ('test-reports.R:263:3'): plot_overview_combo_static() looks how it should ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri::aggregate_data(...) at test-reports.R:263:3
2. └─daiquiri:::aggregate_field(...)
3. └─daiquiri:::aggregate_and_append_values(...)
4. └─daiquiri:::aggregate_and_append_values_simple(...)
5. ├─...[]
6. └─data.table:::`[.data.table`(...)
── Error ('test-reports.R:300:3'): plot_subcat_heatmap_static() looks how it should ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri::aggregate_data(...) at test-reports.R:300:3
2. └─daiquiri:::aggregate_field(...)
3. └─daiquiri:::aggregate_and_append_values(...)
4. └─daiquiri:::aggregate_and_append_values_simple(...)
5. ├─...[]
6. └─data.table:::`[.data.table`(...)
── Error ('test-reports.R:334:3'): plot_stratified_facetgrid_static() looks how it should ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri::aggregate_data(...) at test-reports.R:334:3
2. └─daiquiri:::aggregate_field(...)
3. └─daiquiri:::aggregate_and_append_values(...)
4. └─daiquiri:::aggregate_and_append_values_simple(...)
5. ├─...[]
6. └─data.table:::`[.data.table`(...)
── Error ('test-reports.R:368:3'): plot_stratified_totals_static() looks how it should ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri::aggregate_data(...) at test-reports.R:368:3
2. └─daiquiri:::aggregate_field(...)
3. └─daiquiri:::aggregate_and_append_values(...)
4. └─daiquiri:::aggregate_and_append_values_simple(...)
5. ├─...[]
6. └─data.table:::`[.data.table`(...)
── Error ('test-reports.R:407:3'): plot_stratified_combo_static() looks how it should ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri::aggregate_data(...) at test-reports.R:407:3
2. └─daiquiri:::aggregate_field(...)
3. └─daiquiri:::aggregate_and_append_values(...)
4. └─daiquiri:::aggregate_and_append_values_simple(...)
5. ├─...[]
6. └─data.table:::`[.data.table`(...)
[ FAIL 61 | WARN 0 | SKIP 6 | PASS 181 ]
Deleting unused snapshots: 'aggregate_data/test_[ALL_FIELDS_COMBINED].csv',
'aggregate_data/test_[DUPLICATES].csv', 'aggregate_data/test_col1.csv',
'aggregate_data/test_col2.csv', 'reports/plot-overview-combo-static.svg',
'reports/plot-overview-heatmap-static.svg',
'reports/plot-overview-totals-static-empty.svg',
'reports/plot-overview-totals-static.svg',
'reports/plot-stratified-combo-static.svg',
'reports/plot-stratified-facetgrid-static.svg',
'reports/plot-stratified-totals-static.svg',
'reports/plot-subcat-heatmap-static.svg',
'reports/plot-timeseries-static-empty.svg', and
'reports/plot-timeseries-static.svg'
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 1.2.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘daiquiri.Rmd’ using rmarkdown
Quitting from daiquiri.Rmd:136-153 [unnamed-chunk-4]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `[.data.table`:
! attempt access index 1/1 in VECTOR_ELT
---
Backtrace:
▆
1. └─daiquiri::daiquiri_report(...)
2. └─daiquiri::aggregate_data(...)
3. └─daiquiri:::aggregate_field(...)
4. └─daiquiri:::aggregate_and_append_values(...)
5. └─daiquiri:::aggregate_and_append_values_simple(...)
6. ├─...[]
7. └─data.table:::`[.data.table`(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'daiquiri.Rmd' failed with diagnostics:
attempt access index 1/1 in VECTOR_ELT
--- failed re-building ‘daiquiri.Rmd’
SUMMARY: processing the following file failed:
‘daiquiri.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 1.2.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [19s/23s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(daiquiri)
>
> test_check("daiquiri")
Saving _problems/test-aggregate_data-64.R
Saving _problems/test-aggregate_data-149.R
Saving _problems/test-aggregate_data-194.R
Saving _problems/test-aggregate_data-223.R
Saving _problems/test-aggregate_data-258.R
Saving _problems/test-aggregate_data-315.R
Saving _problems/test-aggregation_functions-22.R
Saving _problems/test-aggregation_functions-51.R
Saving _problems/test-aggregation_functions-81.R
Saving _problems/test-aggregation_functions-110.R
Saving _problems/test-aggregation_functions-139.R
Saving _problems/test-aggregation_functions-168.R
Saving _problems/test-aggregation_functions-197.R
Saving _problems/test-aggregation_functions-226.R
Saving _problems/test-aggregation_functions-259.R
Saving _problems/test-aggregation_functions-288.R
Saving _problems/test-aggregation_functions-317.R
Saving _problems/test-aggregation_functions-350.R
Saving _problems/test-aggregation_functions-380.R
Saving _problems/test-aggregation_functions-410.R
Saving _problems/test-aggregation_functions-438.R
Saving _problems/test-aggregation_functions-470.R
Saving _problems/test-aggregation_functions-499.R
Saving _problems/test-aggregation_functions-533.R
Saving _problems/test-aggregation_functions-564.R
Saving _problems/test-aggregation_functions-599.R
Saving _problems/test-aggregation_functions-629.R
Saving _problems/test-aggregation_functions-663.R
Saving _problems/test-aggregation_functions-698.R
Saving _problems/test-aggregation_functions-728.R
Saving _problems/test-aggregation_functions-762.R
Saving _problems/test-aggregation_functions-797.R
Saving _problems/test-aggregation_functions-827.R
Saving _problems/test-aggregation_functions-862.R
Saving _problems/test-aggregation_functions-892.R
Saving _problems/test-aggregation_functions-927.R
Saving _problems/test-aggregation_functions-956.R
Saving _problems/test-aggregation_functions-990.R
Saving _problems/test-aggregation_functions-1019.R
Saving _problems/test-aggregation_functions-1053.R
Saving _problems/test-aggregation_functions-1082.R
Saving _problems/test-aggregation_functions-1116.R
Saving _problems/test-aggregation_functions-1147.R
Saving _problems/test-aggregation_functions-1189.R
Saving _problems/test-main-107.R
Saving _problems/test-main-147.R
Saving _problems/test-main-171.R
Saving _problems/test-main-220.R
Saving _problems/test-main-270.R
Saving _problems/test-main-320.R
Saving _problems/test-main-353.R
Saving _problems/test-reports-83.R
Saving _problems/test-reports-122.R
Saving _problems/test-reports-162.R
Saving _problems/test-reports-192.R
Saving _problems/test-reports-228.R
Saving _problems/test-reports-267.R
Saving _problems/test-reports-304.R
Saving _problems/test-reports-338.R
Saving _problems/test-reports-372.R
Saving _problems/test-reports-411.R
[ FAIL 61 | WARN 0 | SKIP 6 | PASS 181 ]
══ Skipped tests (6) ═══════════════════════════════════════════════════════════
• On CRAN (6): 'test-field_types.R:152:1', 'test-field_types.R:160:1',
'test-field_types.R:178:1', 'test-source_data.R:146:1',
'test-source_data.R:399:1', 'test-source_data.R:439:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-aggregate_data.R:60:3'): aggregate_data() creates aggregate object correctly ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri::aggregate_data(...) at test-aggregate_data.R:60:3
2. └─daiquiri:::aggregate_field(...)
3. └─daiquiri:::aggregate_and_append_values(...)
4. └─daiquiri:::aggregate_and_append_values_simple(...)
5. ├─...[]
6. └─data.table:::`[.data.table`(...)
── Error ('test-aggregate_data.R:146:3'): export_aggregated_data() generates csv files ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri::aggregate_data(...) at test-aggregate_data.R:146:3
2. └─daiquiri:::aggregate_field(...)
3. └─daiquiri:::aggregate_and_append_values(...)
4. └─daiquiri:::aggregate_and_append_values_simple(...)
5. ├─...[]
6. └─data.table:::`[.data.table`(...)
── Error ('test-aggregate_data.R:190:3'): aggregate_combined_fields() removes NAs when rowsumming ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri::aggregate_data(...) at test-aggregate_data.R:190:3
2. └─daiquiri:::aggregate_field(...)
3. └─daiquiri:::aggregate_and_append_values(...)
4. └─daiquiri:::aggregate_and_append_values_simple(...)
5. ├─...[]
6. └─data.table:::`[.data.table`(...)
── Error ('test-aggregate_data.R:219:3'): aggregated_data object prints to console ok ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri::aggregate_data(...) at test-aggregate_data.R:219:3
2. └─daiquiri:::aggregate_field(...)
3. └─daiquiri:::aggregate_and_append_values(...)
4. └─daiquiri:::aggregate_and_append_values_simple(...)
5. ├─...[]
6. └─data.table:::`[.data.table`(...)
── Error ('test-aggregate_data.R:254:3'): aggregated values contain NAs instead of Infs or NaNs ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri::aggregate_data(...) at test-aggregate_data.R:254:3
2. └─daiquiri:::aggregate_field(...)
3. └─daiquiri:::aggregate_and_append_values(...)
4. └─daiquiri:::aggregate_and_append_values_simple(...)
5. ├─...[]
6. └─data.table:::`[.data.table`(...)
── Error ('test-aggregate_data.R:310:3'): aggregate_data() stratifies aggregations correctly ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri::aggregate_data(...) at test-aggregate_data.R:310:3
2. └─daiquiri:::aggregate_field(...)
3. └─daiquiri:::aggregate_and_append_values(...)
4. └─daiquiri:::aggregate_and_append_values_simple(...)
5. ├─...[]
6. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:18:3'): aggregate_and_append_values 'n' works as expected ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:18:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:46:3'): aggregate_and_append_values 'n' works as expected when all values are missing ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:46:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:76:3'): aggregate_and_append_values 'missing_n' works as expected ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:76:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:105:3'): aggregate_and_append_values 'missing_n' works as expected when all values are missing ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:105:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:135:3'): aggregate_and_append_values 'missing_perc' works as expected ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:135:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:163:3'): aggregate_and_append_values 'missing_perc' works as expected when all values are missing ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:163:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:193:3'): aggregate_and_append_values 'nonconformant_n' works as expected for numeric fields ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:193:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:222:3'): aggregate_and_append_values 'nonconformant_n' works as expected for date fields ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:222:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:254:3'): aggregate_and_append_values 'nonconformant_n' works as expected when all values are missing ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:254:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:284:3'): aggregate_and_append_values 'nonconformant_perc' works as expected for numeric fields ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:284:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:313:3'): aggregate_and_append_values 'nonconformant_perc' works as expected for date fields ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:313:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:345:3'): aggregate_and_append_values 'nonconformant_perc' works as expected when all values are missing ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:345:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:375:3'): aggregate_and_append_values 'sum' works as expected ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:375:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:405:3'): aggregate_and_append_values 'nonzero_perc' works as expected ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:405:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:434:3'): aggregate_and_append_values 'distinct' works as expected ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:434:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:464:3'): aggregate_and_append_values 'distinct' works as expected when all values are missing ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:464:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:495:3'): aggregate_and_append_values 'midnight_n' works as expected ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:495:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:527:3'): aggregate_and_append_values 'midnight_n' works as expected when all values are missing ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:527:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:560:3'): aggregate_and_append_values 'midnight_perc' works as expected ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:560:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:593:3'): aggregate_and_append_values 'midnight_perc' works as expected when all values are missing ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:593:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:625:3'): aggregate_and_append_values 'min' works as expected for numeric fields ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:625:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:659:3'): aggregate_and_append_values 'min' works as expected for date fields ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:659:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:692:3'): aggregate_and_append_values 'min' works as expected when all values are missing ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:692:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:724:3'): aggregate_and_append_values 'max' works as expected for numeric fields ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:724:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:758:3'): aggregate_and_append_values 'max' works as expected for date fields ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:758:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:791:3'): aggregate_and_append_values 'max' works as expected when all values are missing ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:791:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:823:3'): aggregate_and_append_values 'mean' works as expected ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:823:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:856:3'): aggregate_and_append_values 'mean' works as expected when all values are missing ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:856:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:888:3'): aggregate_and_append_values 'median' works as expected ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:888:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:921:3'): aggregate_and_append_values 'median' works as expected when all values are missing ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:921:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:952:3'): aggregate_and_append_values 'min_length' works as expected ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:952:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:984:3'): aggregate_and_append_values 'min_length' works as expected when all values are missing ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:984:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:1015:3'): aggregate_and_append_values 'max_length' works as expected ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:1015:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:1047:3'): aggregate_and_append_values 'max_length' works as expected when all values are missing ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:1047:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:1078:3'): aggregate_and_append_values 'mean_length' works as expected ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:1078:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:1110:3'): aggregate_and_append_values 'mean_length' works as expected when all values are missing ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:1110:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:1142:3'): aggregate_and_append_values 'subcat_n' works as expected ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((catname), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:1142:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_subcat(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:1184:3'): aggregate_and_append_values 'subcat_perc' works as expected ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((catname), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:1184:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_subcat(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-main.R:70:3'): daiquiri_report() creates report and returns daiquiri object successfully ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri::daiquiri_report(...) at test-main.R:70:3
2. └─daiquiri::aggregate_data(...)
3. └─daiquiri:::aggregate_field(...)
4. └─daiquiri:::aggregate_and_append_values(...)
5. └─daiquiri:::aggregate_and_append_values_simple(...)
6. ├─...[]
7. └─data.table:::`[.data.table`(...)
── Error ('test-main.R:126:3'): daiquiri_report() works even when column_names contain special chars ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri::daiquiri_report(...) at test-main.R:126:3
2. └─daiquiri::aggregate_data(...)
3. └─daiquiri:::aggregate_field(...)
4. └─daiquiri:::aggregate_and_append_values(...)
5. └─daiquiri:::aggregate_and_append_values_simple(...)
6. ├─...[]
7. └─data.table:::`[.data.table`(...)
── Error ('test-main.R:160:3'): daiquiri_report() gets dataset_description from call if NULL (default) passed in ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri::daiquiri_report(...) at test-main.R:160:3
2. └─daiquiri::aggregate_data(...)
3. └─daiquiri:::aggregate_field(...)
4. └─daiquiri:::aggregate_and_append_values(...)
5. └─daiquiri:::aggregate_and_append_values_simple(...)
6. ├─...[]
7. └─data.table:::`[.data.table`(...)
── Error ('test-main.R:204:3'): daiquiri_object prints to console ok ───────────
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri::daiquiri_report(...) at test-main.R:204:3
2. └─daiquiri::aggregate_data(...)
3. └─daiquiri:::aggregate_field(...)
4. └─daiquiri:::aggregate_and_append_values(...)
5. └─daiquiri:::aggregate_and_append_values_simple(...)
6. ├─...[]
7. └─data.table:::`[.data.table`(...)
── Error ('test-main.R:252:3'): daiquiri_report() creates stratified report without error ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri::daiquiri_report(...) at test-main.R:252:3
2. └─daiquiri::aggregate_data(...)
3. └─daiquiri:::aggregate_field(...)
4. └─daiquiri:::aggregate_and_append_values(...)
5. └─daiquiri:::aggregate_and_append_values_simple(...)
6. ├─...[]
7. └─data.table:::`[.data.table`(...)
── Error ('test-main.R:301:3'): daiquiri_report() creates stratified report without error when strata contain special chars ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri::daiquiri_report(...) at test-main.R:301:3
2. └─daiquiri::aggregate_data(...)
3. └─daiquiri:::aggregate_field(...)
4. └─daiquiri:::aggregate_and_append_values(...)
5. └─daiquiri:::aggregate_and_append_values_simple(...)
6. ├─...[]
7. └─data.table:::`[.data.table`(...)
── Error ('test-main.R:341:3'): daiquiri_report() creates report without error when subcats contain special chars ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri::daiquiri_report(...) at test-main.R:341:3
2. └─daiquiri::aggregate_data(...)
3. └─daiquiri:::aggregate_field(...)
4. └─daiquiri:::aggregate_and_append_values(...)
5. └─daiquiri:::aggregate_and_append_values_simple(...)
6. ├─...[]
7. └─data.table:::`[.data.table`(...)
── Error ('test-reports.R:79:3'): report_data() creates report and returns path successfully ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri::aggregate_data(...) at test-reports.R:79:3
2. └─daiquiri:::aggregate_field(...)
3. └─daiquiri:::aggregate_and_append_values(...)
4. └─daiquiri:::aggregate_and_append_values_simple(...)
5. ├─...[]
6. └─data.table:::`[.data.table`(...)
── Error ('test-reports.R:118:3'): plots still work when all values are missing ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri::aggregate_data(...) at test-reports.R:118:3
2. └─daiquiri:::aggregate_field(...)
3. └─daiquiri:::aggregate_and_append_values(...)
4. └─daiquiri:::aggregate_and_append_values_simple(...)
5. ├─...[]
6. └─data.table:::`[.data.table`(...)
── Error ('test-reports.R:158:3'): plot_timeseries_static() looks how it should ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri::aggregate_data(...) at test-reports.R:158:3
2. └─daiquiri:::aggregate_field(...)
3. └─daiquiri:::aggregate_and_append_values(...)
4. └─daiquiri:::aggregate_and_append_values_simple(...)
5. ├─...[]
6. └─data.table:::`[.data.table`(...)
── Error ('test-reports.R:188:3'): plot_overview_totals_static() looks how it should ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri::aggregate_data(...) at test-reports.R:188:3
2. └─daiquiri:::aggregate_field(...)
3. └─daiquiri:::aggregate_and_append_values(...)
4. └─daiquiri:::aggregate_and_append_values_simple(...)
5. ├─...[]
6. └─data.table:::`[.data.table`(...)
── Error ('test-reports.R:224:3'): plot_overview_heatmap_static() looks how it should ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri::aggregate_data(...) at test-reports.R:224:3
2. └─daiquiri:::aggregate_field(...)
3. └─daiquiri:::aggregate_and_append_values(...)
4. └─daiquiri:::aggregate_and_append_values_simple(...)
5. ├─...[]
6. └─data.table:::`[.data.table`(...)
── Error ('test-reports.R:263:3'): plot_overview_combo_static() looks how it should ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri::aggregate_data(...) at test-reports.R:263:3
2. └─daiquiri:::aggregate_field(...)
3. └─daiquiri:::aggregate_and_append_values(...)
4. └─daiquiri:::aggregate_and_append_values_simple(...)
5. ├─...[]
6. └─data.table:::`[.data.table`(...)
── Error ('test-reports.R:300:3'): plot_subcat_heatmap_static() looks how it should ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri::aggregate_data(...) at test-reports.R:300:3
2. └─daiquiri:::aggregate_field(...)
3. └─daiquiri:::aggregate_and_append_values(...)
4. └─daiquiri:::aggregate_and_append_values_simple(...)
5. ├─...[]
6. └─data.table:::`[.data.table`(...)
── Error ('test-reports.R:334:3'): plot_stratified_facetgrid_static() looks how it should ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri::aggregate_data(...) at test-reports.R:334:3
2. └─daiquiri:::aggregate_field(...)
3. └─daiquiri:::aggregate_and_append_values(...)
4. └─daiquiri:::aggregate_and_append_values_simple(...)
5. ├─...[]
6. └─data.table:::`[.data.table`(...)
── Error ('test-reports.R:368:3'): plot_stratified_totals_static() looks how it should ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri::aggregate_data(...) at test-reports.R:368:3
2. └─daiquiri:::aggregate_field(...)
3. └─daiquiri:::aggregate_and_append_values(...)
4. └─daiquiri:::aggregate_and_append_values_simple(...)
5. ├─...[]
6. └─data.table:::`[.data.table`(...)
── Error ('test-reports.R:407:3'): plot_stratified_combo_static() looks how it should ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri::aggregate_data(...) at test-reports.R:407:3
2. └─daiquiri:::aggregate_field(...)
3. └─daiquiri:::aggregate_and_append_values(...)
4. └─daiquiri:::aggregate_and_append_values_simple(...)
5. ├─...[]
6. └─data.table:::`[.data.table`(...)
[ FAIL 61 | WARN 0 | SKIP 6 | PASS 181 ]
Deleting unused snapshots: 'aggregate_data/test_[ALL_FIELDS_COMBINED].csv',
'aggregate_data/test_[DUPLICATES].csv', 'aggregate_data/test_col1.csv',
'aggregate_data/test_col2.csv', 'reports/plot-overview-combo-static.svg',
'reports/plot-overview-heatmap-static.svg',
'reports/plot-overview-totals-static-empty.svg',
'reports/plot-overview-totals-static.svg',
'reports/plot-stratified-combo-static.svg',
'reports/plot-stratified-facetgrid-static.svg',
'reports/plot-stratified-totals-static.svg',
'reports/plot-subcat-heatmap-static.svg',
'reports/plot-timeseries-static-empty.svg', and
'reports/plot-timeseries-static.svg'
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.2.1
Check: examples
Result: ERROR
Running examples in ‘daiquiri-Ex.R’ failed
The error most likely occurred in:
> ### Name: aggregate_data
> ### Title: Aggregate source data
> ### Aliases: aggregate_data
>
> ### ** Examples
>
> ## Don't show:
> # restrict threads for CRAN compliance
> dt_threads <- data.table::getDTthreads()
> data.table::setDTthreads(1)
> ## End(Don't show)
>
> # load example data into a data.frame
> raw_data <- read_data(
+ system.file("extdata", "example_prescriptions.csv", package = "daiquiri"),
+ delim = ",",
+ col_names = TRUE
+ )
>
> # validate and prepare the data for aggregation
> source_data <- prepare_data(
+ raw_data,
+ field_types = field_types(
+ PrescriptionID = ft_uniqueidentifier(),
+ PrescriptionDate = ft_timepoint(),
+ AdmissionDate = ft_datetime(includes_time = FALSE),
+ Drug = ft_freetext(),
+ Dose = ft_numeric(),
+ DoseUnit = ft_categorical(),
+ PatientID = ft_ignore(),
+ Location = ft_categorical(aggregate_by_each_category = TRUE)
+ ),
+ override_column_names = FALSE,
+ na = c("", "NULL")
+ )
field_types supplied:
PrescriptionID <uniqueidentifier>
PrescriptionDate <timepoint> options: includes_time
AdmissionDate <datetime>
Drug <freetext>
Dose <numeric>
DoseUnit <categorical>
PatientID <ignore>
Location <categorical> options: aggregate_by_each_category
Checking column names against field_types...
Importing source data [raw_data]...
Removing column-specific na values...
Checking data against field_types...
Selecting relevant warnings...
Identifying nonconformant values...
Checking and removing missing timepoints...
Checking for duplicates...
Sorting data...
Loading into source_data structure...
PrescriptionID
PrescriptionDate
AdmissionDate
Drug
Dose
DoseUnit
PatientID
Location
Finished
>
> # aggregate the data
> aggregated_data <- aggregate_data(
+ source_data,
+ aggregation_timeunit = "day"
+ )
Aggregating [] by [day]...
Aggregating overall dataset...
Aggregating each data_field in turn...
1: PrescriptionID
Preparing...
Aggregating character field...
By n
Error in `[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), :
attempt access index 1/1 in VECTOR_ELT
Calls: aggregate_data ... aggregate_and_append_values_simple -> [ -> [.data.table
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 1.2.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [42s/59s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(daiquiri)
>
> test_check("daiquiri")
Saving _problems/test-aggregate_data-64.R
Saving _problems/test-aggregate_data-149.R
Saving _problems/test-aggregate_data-194.R
Saving _problems/test-aggregate_data-223.R
Saving _problems/test-aggregate_data-258.R
Saving _problems/test-aggregate_data-315.R
Saving _problems/test-aggregation_functions-22.R
Saving _problems/test-aggregation_functions-51.R
Saving _problems/test-aggregation_functions-81.R
Saving _problems/test-aggregation_functions-110.R
Saving _problems/test-aggregation_functions-139.R
Saving _problems/test-aggregation_functions-168.R
Saving _problems/test-aggregation_functions-197.R
Saving _problems/test-aggregation_functions-226.R
Saving _problems/test-aggregation_functions-259.R
Saving _problems/test-aggregation_functions-288.R
Saving _problems/test-aggregation_functions-317.R
Saving _problems/test-aggregation_functions-350.R
Saving _problems/test-aggregation_functions-380.R
Saving _problems/test-aggregation_functions-410.R
Saving _problems/test-aggregation_functions-438.R
Saving _problems/test-aggregation_functions-470.R
Saving _problems/test-aggregation_functions-499.R
Saving _problems/test-aggregation_functions-533.R
Saving _problems/test-aggregation_functions-564.R
Saving _problems/test-aggregation_functions-599.R
Saving _problems/test-aggregation_functions-629.R
Saving _problems/test-aggregation_functions-663.R
Saving _problems/test-aggregation_functions-698.R
Saving _problems/test-aggregation_functions-728.R
Saving _problems/test-aggregation_functions-762.R
Saving _problems/test-aggregation_functions-797.R
Saving _problems/test-aggregation_functions-827.R
Saving _problems/test-aggregation_functions-862.R
Saving _problems/test-aggregation_functions-892.R
Saving _problems/test-aggregation_functions-927.R
Saving _problems/test-aggregation_functions-956.R
Saving _problems/test-aggregation_functions-990.R
Saving _problems/test-aggregation_functions-1019.R
Saving _problems/test-aggregation_functions-1053.R
Saving _problems/test-aggregation_functions-1082.R
Saving _problems/test-aggregation_functions-1116.R
Saving _problems/test-aggregation_functions-1147.R
Saving _problems/test-aggregation_functions-1189.R
Saving _problems/test-main-107.R
Saving _problems/test-main-147.R
Saving _problems/test-main-171.R
Saving _problems/test-main-220.R
Saving _problems/test-main-270.R
Saving _problems/test-main-320.R
Saving _problems/test-main-353.R
Saving _problems/test-reports-83.R
Saving _problems/test-reports-122.R
Saving _problems/test-reports-162.R
Saving _problems/test-reports-192.R
Saving _problems/test-reports-228.R
Saving _problems/test-reports-267.R
Saving _problems/test-reports-304.R
Saving _problems/test-reports-338.R
Saving _problems/test-reports-372.R
Saving _problems/test-reports-411.R
[ FAIL 61 | WARN 0 | SKIP 6 | PASS 181 ]
══ Skipped tests (6) ═══════════════════════════════════════════════════════════
• On CRAN (6): 'test-field_types.R:152:1', 'test-field_types.R:160:1',
'test-field_types.R:178:1', 'test-source_data.R:146:1',
'test-source_data.R:399:1', 'test-source_data.R:439:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-aggregate_data.R:60:3'): aggregate_data() creates aggregate object correctly ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri::aggregate_data(...) at test-aggregate_data.R:60:3
2. └─daiquiri:::aggregate_field(...)
3. └─daiquiri:::aggregate_and_append_values(...)
4. └─daiquiri:::aggregate_and_append_values_simple(...)
5. ├─...[]
6. └─data.table:::`[.data.table`(...)
── Error ('test-aggregate_data.R:146:3'): export_aggregated_data() generates csv files ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri::aggregate_data(...) at test-aggregate_data.R:146:3
2. └─daiquiri:::aggregate_field(...)
3. └─daiquiri:::aggregate_and_append_values(...)
4. └─daiquiri:::aggregate_and_append_values_simple(...)
5. ├─...[]
6. └─data.table:::`[.data.table`(...)
── Error ('test-aggregate_data.R:190:3'): aggregate_combined_fields() removes NAs when rowsumming ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri::aggregate_data(...) at test-aggregate_data.R:190:3
2. └─daiquiri:::aggregate_field(...)
3. └─daiquiri:::aggregate_and_append_values(...)
4. └─daiquiri:::aggregate_and_append_values_simple(...)
5. ├─...[]
6. └─data.table:::`[.data.table`(...)
── Error ('test-aggregate_data.R:219:3'): aggregated_data object prints to console ok ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri::aggregate_data(...) at test-aggregate_data.R:219:3
2. └─daiquiri:::aggregate_field(...)
3. └─daiquiri:::aggregate_and_append_values(...)
4. └─daiquiri:::aggregate_and_append_values_simple(...)
5. ├─...[]
6. └─data.table:::`[.data.table`(...)
── Error ('test-aggregate_data.R:254:3'): aggregated values contain NAs instead of Infs or NaNs ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri::aggregate_data(...) at test-aggregate_data.R:254:3
2. └─daiquiri:::aggregate_field(...)
3. └─daiquiri:::aggregate_and_append_values(...)
4. └─daiquiri:::aggregate_and_append_values_simple(...)
5. ├─...[]
6. └─data.table:::`[.data.table`(...)
── Error ('test-aggregate_data.R:310:3'): aggregate_data() stratifies aggregations correctly ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri::aggregate_data(...) at test-aggregate_data.R:310:3
2. └─daiquiri:::aggregate_field(...)
3. └─daiquiri:::aggregate_and_append_values(...)
4. └─daiquiri:::aggregate_and_append_values_simple(...)
5. ├─...[]
6. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:18:3'): aggregate_and_append_values 'n' works as expected ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:18:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:46:3'): aggregate_and_append_values 'n' works as expected when all values are missing ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:46:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:76:3'): aggregate_and_append_values 'missing_n' works as expected ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:76:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:105:3'): aggregate_and_append_values 'missing_n' works as expected when all values are missing ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:105:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:135:3'): aggregate_and_append_values 'missing_perc' works as expected ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:135:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:163:3'): aggregate_and_append_values 'missing_perc' works as expected when all values are missing ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:163:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:193:3'): aggregate_and_append_values 'nonconformant_n' works as expected for numeric fields ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:193:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:222:3'): aggregate_and_append_values 'nonconformant_n' works as expected for date fields ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:222:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:254:3'): aggregate_and_append_values 'nonconformant_n' works as expected when all values are missing ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:254:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:284:3'): aggregate_and_append_values 'nonconformant_perc' works as expected for numeric fields ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:284:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:313:3'): aggregate_and_append_values 'nonconformant_perc' works as expected for date fields ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:313:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:345:3'): aggregate_and_append_values 'nonconformant_perc' works as expected when all values are missing ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:345:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:375:3'): aggregate_and_append_values 'sum' works as expected ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:375:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:405:3'): aggregate_and_append_values 'nonzero_perc' works as expected ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:405:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:434:3'): aggregate_and_append_values 'distinct' works as expected ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:434:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:464:3'): aggregate_and_append_values 'distinct' works as expected when all values are missing ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:464:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:495:3'): aggregate_and_append_values 'midnight_n' works as expected ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:495:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:527:3'): aggregate_and_append_values 'midnight_n' works as expected when all values are missing ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:527:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:560:3'): aggregate_and_append_values 'midnight_perc' works as expected ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:560:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:593:3'): aggregate_and_append_values 'midnight_perc' works as expected when all values are missing ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:593:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:625:3'): aggregate_and_append_values 'min' works as expected for numeric fields ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:625:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:659:3'): aggregate_and_append_values 'min' works as expected for date fields ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:659:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:692:3'): aggregate_and_append_values 'min' works as expected when all values are missing ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:692:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:724:3'): aggregate_and_append_values 'max' works as expected for numeric fields ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:724:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:758:3'): aggregate_and_append_values 'max' works as expected for date fields ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:758:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:791:3'): aggregate_and_append_values 'max' works as expected when all values are missing ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:791:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:823:3'): aggregate_and_append_values 'mean' works as expected ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:823:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:856:3'): aggregate_and_append_values 'mean' works as expected when all values are missing ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:856:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:888:3'): aggregate_and_append_values 'median' works as expected ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:888:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:921:3'): aggregate_and_append_values 'median' works as expected when all values are missing ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:921:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:952:3'): aggregate_and_append_values 'min_length' works as expected ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:952:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:984:3'): aggregate_and_append_values 'min_length' works as expected when all values are missing ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:984:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:1015:3'): aggregate_and_append_values 'max_length' works as expected ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:1015:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:1047:3'): aggregate_and_append_values 'max_length' works as expected when all values are missing ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:1047:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:1078:3'): aggregate_and_append_values 'mean_length' works as expected ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:1078:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:1110:3'): aggregate_and_append_values 'mean_length' works as expected when all values are missing ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:1110:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:1142:3'): aggregate_and_append_values 'subcat_n' works as expected ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((catname), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:1142:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_subcat(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:1184:3'): aggregate_and_append_values 'subcat_perc' works as expected ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((catname), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:1184:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_subcat(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-main.R:70:3'): daiquiri_report() creates report and returns daiquiri object successfully ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri::daiquiri_report(...) at test-main.R:70:3
2. └─daiquiri::aggregate_data(...)
3. └─daiquiri:::aggregate_field(...)
4. └─daiquiri:::aggregate_and_append_values(...)
5. └─daiquiri:::aggregate_and_append_values_simple(...)
6. ├─...[]
7. └─data.table:::`[.data.table`(...)
── Error ('test-main.R:126:3'): daiquiri_report() works even when column_names contain special chars ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri::daiquiri_report(...) at test-main.R:126:3
2. └─daiquiri::aggregate_data(...)
3. └─daiquiri:::aggregate_field(...)
4. └─daiquiri:::aggregate_and_append_values(...)
5. └─daiquiri:::aggregate_and_append_values_simple(...)
6. ├─...[]
7. └─data.table:::`[.data.table`(...)
── Error ('test-main.R:160:3'): daiquiri_report() gets dataset_description from call if NULL (default) passed in ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri::daiquiri_report(...) at test-main.R:160:3
2. └─daiquiri::aggregate_data(...)
3. └─daiquiri:::aggregate_field(...)
4. └─daiquiri:::aggregate_and_append_values(...)
5. └─daiquiri:::aggregate_and_append_values_simple(...)
6. ├─...[]
7. └─data.table:::`[.data.table`(...)
── Error ('test-main.R:204:3'): daiquiri_object prints to console ok ───────────
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri::daiquiri_report(...) at test-main.R:204:3
2. └─daiquiri::aggregate_data(...)
3. └─daiquiri:::aggregate_field(...)
4. └─daiquiri:::aggregate_and_append_values(...)
5. └─daiquiri:::aggregate_and_append_values_simple(...)
6. ├─...[]
7. └─data.table:::`[.data.table`(...)
── Error ('test-main.R:252:3'): daiquiri_report() creates stratified report without error ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri::daiquiri_report(...) at test-main.R:252:3
2. └─daiquiri::aggregate_data(...)
3. └─daiquiri:::aggregate_field(...)
4. └─daiquiri:::aggregate_and_append_values(...)
5. └─daiquiri:::aggregate_and_append_values_simple(...)
6. ├─...[]
7. └─data.table:::`[.data.table`(...)
── Error ('test-main.R:301:3'): daiquiri_report() creates stratified report without error when strata contain special chars ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri::daiquiri_report(...) at test-main.R:301:3
2. └─daiquiri::aggregate_data(...)
3. └─daiquiri:::aggregate_field(...)
4. └─daiquiri:::aggregate_and_append_values(...)
5. └─daiquiri:::aggregate_and_append_values_simple(...)
6. ├─...[]
7. └─data.table:::`[.data.table`(...)
── Error ('test-main.R:341:3'): daiquiri_report() creates report without error when subcats contain special chars ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri::daiquiri_report(...) at test-main.R:341:3
2. └─daiquiri::aggregate_data(...)
3. └─daiquiri:::aggregate_field(...)
4. └─daiquiri:::aggregate_and_append_values(...)
5. └─daiquiri:::aggregate_and_append_values_simple(...)
6. ├─...[]
7. └─data.table:::`[.data.table`(...)
── Error ('test-reports.R:79:3'): report_data() creates report and returns path successfully ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri::aggregate_data(...) at test-reports.R:79:3
2. └─daiquiri:::aggregate_field(...)
3. └─daiquiri:::aggregate_and_append_values(...)
4. └─daiquiri:::aggregate_and_append_values_simple(...)
5. ├─...[]
6. └─data.table:::`[.data.table`(...)
── Error ('test-reports.R:118:3'): plots still work when all values are missing ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri::aggregate_data(...) at test-reports.R:118:3
2. └─daiquiri:::aggregate_field(...)
3. └─daiquiri:::aggregate_and_append_values(...)
4. └─daiquiri:::aggregate_and_append_values_simple(...)
5. ├─...[]
6. └─data.table:::`[.data.table`(...)
── Error ('test-reports.R:158:3'): plot_timeseries_static() looks how it should ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri::aggregate_data(...) at test-reports.R:158:3
2. └─daiquiri:::aggregate_field(...)
3. └─daiquiri:::aggregate_and_append_values(...)
4. └─daiquiri:::aggregate_and_append_values_simple(...)
5. ├─...[]
6. └─data.table:::`[.data.table`(...)
── Error ('test-reports.R:188:3'): plot_overview_totals_static() looks how it should ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri::aggregate_data(...) at test-reports.R:188:3
2. └─daiquiri:::aggregate_field(...)
3. └─daiquiri:::aggregate_and_append_values(...)
4. └─daiquiri:::aggregate_and_append_values_simple(...)
5. ├─...[]
6. └─data.table:::`[.data.table`(...)
── Error ('test-reports.R:224:3'): plot_overview_heatmap_static() looks how it should ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri::aggregate_data(...) at test-reports.R:224:3
2. └─daiquiri:::aggregate_field(...)
3. └─daiquiri:::aggregate_and_append_values(...)
4. └─daiquiri:::aggregate_and_append_values_simple(...)
5. ├─...[]
6. └─data.table:::`[.data.table`(...)
── Error ('test-reports.R:263:3'): plot_overview_combo_static() looks how it should ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri::aggregate_data(...) at test-reports.R:263:3
2. └─daiquiri:::aggregate_field(...)
3. └─daiquiri:::aggregate_and_append_values(...)
4. └─daiquiri:::aggregate_and_append_values_simple(...)
5. ├─...[]
6. └─data.table:::`[.data.table`(...)
── Error ('test-reports.R:300:3'): plot_subcat_heatmap_static() looks how it should ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri::aggregate_data(...) at test-reports.R:300:3
2. └─daiquiri:::aggregate_field(...)
3. └─daiquiri:::aggregate_and_append_values(...)
4. └─daiquiri:::aggregate_and_append_values_simple(...)
5. ├─...[]
6. └─data.table:::`[.data.table`(...)
── Error ('test-reports.R:334:3'): plot_stratified_facetgrid_static() looks how it should ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri::aggregate_data(...) at test-reports.R:334:3
2. └─daiquiri:::aggregate_field(...)
3. └─daiquiri:::aggregate_and_append_values(...)
4. └─daiquiri:::aggregate_and_append_values_simple(...)
5. ├─...[]
6. └─data.table:::`[.data.table`(...)
── Error ('test-reports.R:368:3'): plot_stratified_totals_static() looks how it should ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri::aggregate_data(...) at test-reports.R:368:3
2. └─daiquiri:::aggregate_field(...)
3. └─daiquiri:::aggregate_and_append_values(...)
4. └─daiquiri:::aggregate_and_append_values_simple(...)
5. ├─...[]
6. └─data.table:::`[.data.table`(...)
── Error ('test-reports.R:407:3'): plot_stratified_combo_static() looks how it should ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri::aggregate_data(...) at test-reports.R:407:3
2. └─daiquiri:::aggregate_field(...)
3. └─daiquiri:::aggregate_and_append_values(...)
4. └─daiquiri:::aggregate_and_append_values_simple(...)
5. ├─...[]
6. └─data.table:::`[.data.table`(...)
[ FAIL 61 | WARN 0 | SKIP 6 | PASS 181 ]
Deleting unused snapshots: 'aggregate_data/test_[ALL_FIELDS_COMBINED].csv',
'aggregate_data/test_[DUPLICATES].csv', 'aggregate_data/test_col1.csv',
'aggregate_data/test_col2.csv', 'reports/plot-overview-combo-static.svg',
'reports/plot-overview-heatmap-static.svg',
'reports/plot-overview-totals-static-empty.svg',
'reports/plot-overview-totals-static.svg',
'reports/plot-stratified-combo-static.svg',
'reports/plot-stratified-facetgrid-static.svg',
'reports/plot-stratified-totals-static.svg',
'reports/plot-subcat-heatmap-static.svg',
'reports/plot-timeseries-static-empty.svg', and
'reports/plot-timeseries-static.svg'
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.2.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘daiquiri.Rmd’ using rmarkdown
Quitting from daiquiri.Rmd:136-153 [unnamed-chunk-4]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `[.data.table`:
! attempt access index 1/1 in VECTOR_ELT
---
Backtrace:
▆
1. └─daiquiri::daiquiri_report(...)
2. └─daiquiri::aggregate_data(...)
3. └─daiquiri:::aggregate_field(...)
4. └─daiquiri:::aggregate_and_append_values(...)
5. └─daiquiri:::aggregate_and_append_values_simple(...)
6. ├─...[]
7. └─data.table:::`[.data.table`(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'daiquiri.Rmd' failed with diagnostics:
attempt access index 1/1 in VECTOR_ELT
--- failed re-building ‘daiquiri.Rmd’
SUMMARY: processing the following file failed:
‘daiquiri.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 1.2.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [42s/117s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(daiquiri)
>
> test_check("daiquiri")
Saving _problems/test-aggregate_data-64.R
Saving _problems/test-aggregate_data-149.R
Saving _problems/test-aggregate_data-194.R
Saving _problems/test-aggregate_data-223.R
Saving _problems/test-aggregate_data-258.R
Saving _problems/test-aggregate_data-315.R
Saving _problems/test-aggregation_functions-22.R
Saving _problems/test-aggregation_functions-51.R
Saving _problems/test-aggregation_functions-81.R
Saving _problems/test-aggregation_functions-110.R
Saving _problems/test-aggregation_functions-139.R
Saving _problems/test-aggregation_functions-168.R
Saving _problems/test-aggregation_functions-197.R
Saving _problems/test-aggregation_functions-226.R
Saving _problems/test-aggregation_functions-259.R
Saving _problems/test-aggregation_functions-288.R
Saving _problems/test-aggregation_functions-317.R
Saving _problems/test-aggregation_functions-350.R
Saving _problems/test-aggregation_functions-380.R
Saving _problems/test-aggregation_functions-410.R
Saving _problems/test-aggregation_functions-438.R
Saving _problems/test-aggregation_functions-470.R
Saving _problems/test-aggregation_functions-499.R
Saving _problems/test-aggregation_functions-533.R
Saving _problems/test-aggregation_functions-564.R
Saving _problems/test-aggregation_functions-599.R
Saving _problems/test-aggregation_functions-629.R
Saving _problems/test-aggregation_functions-663.R
Saving _problems/test-aggregation_functions-698.R
Saving _problems/test-aggregation_functions-728.R
Saving _problems/test-aggregation_functions-762.R
Saving _problems/test-aggregation_functions-797.R
Saving _problems/test-aggregation_functions-827.R
Saving _problems/test-aggregation_functions-862.R
Saving _problems/test-aggregation_functions-892.R
Saving _problems/test-aggregation_functions-927.R
Saving _problems/test-aggregation_functions-956.R
Saving _problems/test-aggregation_functions-990.R
Saving _problems/test-aggregation_functions-1019.R
Saving _problems/test-aggregation_functions-1053.R
Saving _problems/test-aggregation_functions-1082.R
Saving _problems/test-aggregation_functions-1116.R
Saving _problems/test-aggregation_functions-1147.R
Saving _problems/test-aggregation_functions-1189.R
Saving _problems/test-main-107.R
Saving _problems/test-main-147.R
Saving _problems/test-main-171.R
Saving _problems/test-main-220.R
Saving _problems/test-main-270.R
Saving _problems/test-main-320.R
Saving _problems/test-main-353.R
Saving _problems/test-reports-83.R
Saving _problems/test-reports-122.R
Saving _problems/test-reports-162.R
Saving _problems/test-reports-192.R
Saving _problems/test-reports-228.R
Saving _problems/test-reports-267.R
Saving _problems/test-reports-304.R
Saving _problems/test-reports-338.R
Saving _problems/test-reports-372.R
Saving _problems/test-reports-411.R
[ FAIL 61 | WARN 0 | SKIP 6 | PASS 181 ]
══ Skipped tests (6) ═══════════════════════════════════════════════════════════
• On CRAN (6): 'test-field_types.R:152:1', 'test-field_types.R:160:1',
'test-field_types.R:178:1', 'test-source_data.R:146:1',
'test-source_data.R:399:1', 'test-source_data.R:439:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-aggregate_data.R:60:3'): aggregate_data() creates aggregate object correctly ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri::aggregate_data(...) at test-aggregate_data.R:60:3
2. └─daiquiri:::aggregate_field(...)
3. └─daiquiri:::aggregate_and_append_values(...)
4. └─daiquiri:::aggregate_and_append_values_simple(...)
5. ├─...[]
6. └─data.table:::`[.data.table`(...)
── Error ('test-aggregate_data.R:146:3'): export_aggregated_data() generates csv files ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri::aggregate_data(...) at test-aggregate_data.R:146:3
2. └─daiquiri:::aggregate_field(...)
3. └─daiquiri:::aggregate_and_append_values(...)
4. └─daiquiri:::aggregate_and_append_values_simple(...)
5. ├─...[]
6. └─data.table:::`[.data.table`(...)
── Error ('test-aggregate_data.R:190:3'): aggregate_combined_fields() removes NAs when rowsumming ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri::aggregate_data(...) at test-aggregate_data.R:190:3
2. └─daiquiri:::aggregate_field(...)
3. └─daiquiri:::aggregate_and_append_values(...)
4. └─daiquiri:::aggregate_and_append_values_simple(...)
5. ├─...[]
6. └─data.table:::`[.data.table`(...)
── Error ('test-aggregate_data.R:219:3'): aggregated_data object prints to console ok ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri::aggregate_data(...) at test-aggregate_data.R:219:3
2. └─daiquiri:::aggregate_field(...)
3. └─daiquiri:::aggregate_and_append_values(...)
4. └─daiquiri:::aggregate_and_append_values_simple(...)
5. ├─...[]
6. └─data.table:::`[.data.table`(...)
── Error ('test-aggregate_data.R:254:3'): aggregated values contain NAs instead of Infs or NaNs ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri::aggregate_data(...) at test-aggregate_data.R:254:3
2. └─daiquiri:::aggregate_field(...)
3. └─daiquiri:::aggregate_and_append_values(...)
4. └─daiquiri:::aggregate_and_append_values_simple(...)
5. ├─...[]
6. └─data.table:::`[.data.table`(...)
── Error ('test-aggregate_data.R:310:3'): aggregate_data() stratifies aggregations correctly ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri::aggregate_data(...) at test-aggregate_data.R:310:3
2. └─daiquiri:::aggregate_field(...)
3. └─daiquiri:::aggregate_and_append_values(...)
4. └─daiquiri:::aggregate_and_append_values_simple(...)
5. ├─...[]
6. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:18:3'): aggregate_and_append_values 'n' works as expected ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:18:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:46:3'): aggregate_and_append_values 'n' works as expected when all values are missing ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:46:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:76:3'): aggregate_and_append_values 'missing_n' works as expected ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:76:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:105:3'): aggregate_and_append_values 'missing_n' works as expected when all values are missing ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:105:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:135:3'): aggregate_and_append_values 'missing_perc' works as expected ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:135:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:163:3'): aggregate_and_append_values 'missing_perc' works as expected when all values are missing ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:163:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:193:3'): aggregate_and_append_values 'nonconformant_n' works as expected for numeric fields ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:193:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:222:3'): aggregate_and_append_values 'nonconformant_n' works as expected for date fields ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:222:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:254:3'): aggregate_and_append_values 'nonconformant_n' works as expected when all values are missing ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:254:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:284:3'): aggregate_and_append_values 'nonconformant_perc' works as expected for numeric fields ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:284:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:313:3'): aggregate_and_append_values 'nonconformant_perc' works as expected for date fields ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:313:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:345:3'): aggregate_and_append_values 'nonconformant_perc' works as expected when all values are missing ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:345:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:375:3'): aggregate_and_append_values 'sum' works as expected ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:375:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:405:3'): aggregate_and_append_values 'nonzero_perc' works as expected ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:405:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:434:3'): aggregate_and_append_values 'distinct' works as expected ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:434:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:464:3'): aggregate_and_append_values 'distinct' works as expected when all values are missing ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:464:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:495:3'): aggregate_and_append_values 'midnight_n' works as expected ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:495:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:527:3'): aggregate_and_append_values 'midnight_n' works as expected when all values are missing ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:527:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:560:3'): aggregate_and_append_values 'midnight_perc' works as expected ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:560:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:593:3'): aggregate_and_append_values 'midnight_perc' works as expected when all values are missing ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:593:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:625:3'): aggregate_and_append_values 'min' works as expected for numeric fields ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:625:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:659:3'): aggregate_and_append_values 'min' works as expected for date fields ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:659:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:692:3'): aggregate_and_append_values 'min' works as expected when all values are missing ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:692:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:724:3'): aggregate_and_append_values 'max' works as expected for numeric fields ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:724:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:758:3'): aggregate_and_append_values 'max' works as expected for date fields ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:758:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:791:3'): aggregate_and_append_values 'max' works as expected when all values are missing ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:791:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:823:3'): aggregate_and_append_values 'mean' works as expected ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:823:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:856:3'): aggregate_and_append_values 'mean' works as expected when all values are missing ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:856:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:888:3'): aggregate_and_append_values 'median' works as expected ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:888:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:921:3'): aggregate_and_append_values 'median' works as expected when all values are missing ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:921:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:952:3'): aggregate_and_append_values 'min_length' works as expected ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:952:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:984:3'): aggregate_and_append_values 'min_length' works as expected when all values are missing ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:984:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:1015:3'): aggregate_and_append_values 'max_length' works as expected ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:1015:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:1047:3'): aggregate_and_append_values 'max_length' works as expected when all values are missing ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:1047:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:1078:3'): aggregate_and_append_values 'mean_length' works as expected ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:1078:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:1110:3'): aggregate_and_append_values 'mean_length' works as expected when all values are missing ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:1110:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_simple(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:1142:3'): aggregate_and_append_values 'subcat_n' works as expected ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((catname), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:1142:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_subcat(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-aggregation_functions.R:1184:3'): aggregate_and_append_values 'subcat_perc' works as expected ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((catname), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri:::aggregate_and_append_values_testhelper(...) at test-aggregation_functions.R:1184:3
2. └─daiquiri:::aggregate_and_append_values(...)
3. └─daiquiri:::aggregate_and_append_values_subcat(...)
4. ├─...[]
5. └─data.table:::`[.data.table`(...)
── Error ('test-main.R:70:3'): daiquiri_report() creates report and returns daiquiri object successfully ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri::daiquiri_report(...) at test-main.R:70:3
2. └─daiquiri::aggregate_data(...)
3. └─daiquiri:::aggregate_field(...)
4. └─daiquiri:::aggregate_and_append_values(...)
5. └─daiquiri:::aggregate_and_append_values_simple(...)
6. ├─...[]
7. └─data.table:::`[.data.table`(...)
── Error ('test-main.R:126:3'): daiquiri_report() works even when column_names contain special chars ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri::daiquiri_report(...) at test-main.R:126:3
2. └─daiquiri::aggregate_data(...)
3. └─daiquiri:::aggregate_field(...)
4. └─daiquiri:::aggregate_and_append_values(...)
5. └─daiquiri:::aggregate_and_append_values_simple(...)
6. ├─...[]
7. └─data.table:::`[.data.table`(...)
── Error ('test-main.R:160:3'): daiquiri_report() gets dataset_description from call if NULL (default) passed in ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri::daiquiri_report(...) at test-main.R:160:3
2. └─daiquiri::aggregate_data(...)
3. └─daiquiri:::aggregate_field(...)
4. └─daiquiri:::aggregate_and_append_values(...)
5. └─daiquiri:::aggregate_and_append_values_simple(...)
6. ├─...[]
7. └─data.table:::`[.data.table`(...)
── Error ('test-main.R:204:3'): daiquiri_object prints to console ok ───────────
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri::daiquiri_report(...) at test-main.R:204:3
2. └─daiquiri::aggregate_data(...)
3. └─daiquiri:::aggregate_field(...)
4. └─daiquiri:::aggregate_and_append_values(...)
5. └─daiquiri:::aggregate_and_append_values_simple(...)
6. ├─...[]
7. └─data.table:::`[.data.table`(...)
── Error ('test-main.R:252:3'): daiquiri_report() creates stratified report without error ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri::daiquiri_report(...) at test-main.R:252:3
2. └─daiquiri::aggregate_data(...)
3. └─daiquiri:::aggregate_field(...)
4. └─daiquiri:::aggregate_and_append_values(...)
5. └─daiquiri:::aggregate_and_append_values_simple(...)
6. ├─...[]
7. └─data.table:::`[.data.table`(...)
── Error ('test-main.R:301:3'): daiquiri_report() creates stratified report without error when strata contain special chars ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri::daiquiri_report(...) at test-main.R:301:3
2. └─daiquiri::aggregate_data(...)
3. └─daiquiri:::aggregate_field(...)
4. └─daiquiri:::aggregate_and_append_values(...)
5. └─daiquiri:::aggregate_and_append_values_simple(...)
6. ├─...[]
7. └─data.table:::`[.data.table`(...)
── Error ('test-main.R:341:3'): daiquiri_report() creates report without error when subcats contain special chars ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri::daiquiri_report(...) at test-main.R:341:3
2. └─daiquiri::aggregate_data(...)
3. └─daiquiri:::aggregate_field(...)
4. └─daiquiri:::aggregate_and_append_values(...)
5. └─daiquiri:::aggregate_and_append_values_simple(...)
6. ├─...[]
7. └─data.table:::`[.data.table`(...)
── Error ('test-reports.R:79:3'): report_data() creates report and returns path successfully ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri::aggregate_data(...) at test-reports.R:79:3
2. └─daiquiri:::aggregate_field(...)
3. └─daiquiri:::aggregate_and_append_values(...)
4. └─daiquiri:::aggregate_and_append_values_simple(...)
5. ├─...[]
6. └─data.table:::`[.data.table`(...)
── Error ('test-reports.R:118:3'): plots still work when all values are missing ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri::aggregate_data(...) at test-reports.R:118:3
2. └─daiquiri:::aggregate_field(...)
3. └─daiquiri:::aggregate_and_append_values(...)
4. └─daiquiri:::aggregate_and_append_values_simple(...)
5. ├─...[]
6. └─data.table:::`[.data.table`(...)
── Error ('test-reports.R:158:3'): plot_timeseries_static() looks how it should ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri::aggregate_data(...) at test-reports.R:158:3
2. └─daiquiri:::aggregate_field(...)
3. └─daiquiri:::aggregate_and_append_values(...)
4. └─daiquiri:::aggregate_and_append_values_simple(...)
5. ├─...[]
6. └─data.table:::`[.data.table`(...)
── Error ('test-reports.R:188:3'): plot_overview_totals_static() looks how it should ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri::aggregate_data(...) at test-reports.R:188:3
2. └─daiquiri:::aggregate_field(...)
3. └─daiquiri:::aggregate_and_append_values(...)
4. └─daiquiri:::aggregate_and_append_values_simple(...)
5. ├─...[]
6. └─data.table:::`[.data.table`(...)
── Error ('test-reports.R:224:3'): plot_overview_heatmap_static() looks how it should ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri::aggregate_data(...) at test-reports.R:224:3
2. └─daiquiri:::aggregate_field(...)
3. └─daiquiri:::aggregate_and_append_values(...)
4. └─daiquiri:::aggregate_and_append_values_simple(...)
5. ├─...[]
6. └─data.table:::`[.data.table`(...)
── Error ('test-reports.R:263:3'): plot_overview_combo_static() looks how it should ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri::aggregate_data(...) at test-reports.R:263:3
2. └─daiquiri:::aggregate_field(...)
3. └─daiquiri:::aggregate_and_append_values(...)
4. └─daiquiri:::aggregate_and_append_values_simple(...)
5. ├─...[]
6. └─data.table:::`[.data.table`(...)
── Error ('test-reports.R:300:3'): plot_subcat_heatmap_static() looks how it should ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri::aggregate_data(...) at test-reports.R:300:3
2. └─daiquiri:::aggregate_field(...)
3. └─daiquiri:::aggregate_and_append_values(...)
4. └─daiquiri:::aggregate_and_append_values_simple(...)
5. ├─...[]
6. └─data.table:::`[.data.table`(...)
── Error ('test-reports.R:334:3'): plot_stratified_facetgrid_static() looks how it should ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri::aggregate_data(...) at test-reports.R:334:3
2. └─daiquiri:::aggregate_field(...)
3. └─daiquiri:::aggregate_and_append_values(...)
4. └─daiquiri:::aggregate_and_append_values_simple(...)
5. ├─...[]
6. └─data.table:::`[.data.table`(...)
── Error ('test-reports.R:368:3'): plot_stratified_totals_static() looks how it should ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri::aggregate_data(...) at test-reports.R:368:3
2. └─daiquiri:::aggregate_field(...)
3. └─daiquiri:::aggregate_and_append_values(...)
4. └─daiquiri:::aggregate_and_append_values_simple(...)
5. ├─...[]
6. └─data.table:::`[.data.table`(...)
── Error ('test-reports.R:407:3'): plot_stratified_combo_static() looks how it should ──
Error in ``[.data.table`(grouped_values, data_field_dt[, list(value = eval(agg_fun$function_call)), by = list(timepoint_group)], `:=`((agg_fun$type), value), by = .EACHI)`: attempt access index 1/1 in VECTOR_ELT
Backtrace:
▆
1. └─daiquiri::aggregate_data(...) at test-reports.R:407:3
2. └─daiquiri:::aggregate_field(...)
3. └─daiquiri:::aggregate_and_append_values(...)
4. └─daiquiri:::aggregate_and_append_values_simple(...)
5. ├─...[]
6. └─data.table:::`[.data.table`(...)
[ FAIL 61 | WARN 0 | SKIP 6 | PASS 181 ]
Deleting unused snapshots: 'aggregate_data/test_[ALL_FIELDS_COMBINED].csv',
'aggregate_data/test_[DUPLICATES].csv', 'aggregate_data/test_col1.csv',
'aggregate_data/test_col2.csv', 'reports/plot-overview-combo-static.svg',
'reports/plot-overview-heatmap-static.svg',
'reports/plot-overview-totals-static-empty.svg',
'reports/plot-overview-totals-static.svg',
'reports/plot-stratified-combo-static.svg',
'reports/plot-stratified-facetgrid-static.svg',
'reports/plot-stratified-totals-static.svg',
'reports/plot-subcat-heatmap-static.svg',
'reports/plot-timeseries-static-empty.svg', and
'reports/plot-timeseries-static.svg'
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc