CRAN Package Check Results for Package tidysq

Last updated on 2024-12-25 05:48:47 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.2.2 353.17 83.90 437.07 ERROR
r-devel-linux-x86_64-debian-gcc 1.2.2 218.58 60.10 278.68 ERROR
r-devel-linux-x86_64-fedora-clang 1.2.2 671.87 ERROR
r-devel-linux-x86_64-fedora-gcc 1.2.2 736.31 ERROR
r-devel-windows-x86_64 1.2.2 272.00 146.00 418.00 ERROR
r-patched-linux-x86_64 1.2.2 301.46 79.22 380.68 ERROR
r-release-linux-x86_64 1.2.2 313.01 78.14 391.15 ERROR
r-release-macos-arm64 1.2.2 167.00 NOTE
r-release-macos-x86_64 1.2.2 184.00 NOTE
r-release-windows-x86_64 1.2.2 265.00 137.00 402.00 ERROR
r-oldrel-macos-arm64 1.2.2 203.00 NOTE
r-oldrel-macos-x86_64 1.2.2 191.00 NOTE
r-oldrel-windows-x86_64 1.2.2 344.00 172.00 516.00 ERROR

Check Details

Version: 1.2.2
Check: tests
Result: ERROR Running ‘spelling.R’ [0s/0s] Running ‘testthat.R’ [14s/19s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(tidysq) Attaching package: 'tidysq' The following object is masked from 'package:base': paste > > test_check("tidysq") [ FAIL 6 | WARN 0 | SKIP 1 | PASS 812 ] ══ Skipped tests (1) ═══════════════════════════════════════════════════════════ • warning handling on C++ side is poorly implemented (1): 'test-warnings.R:39:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-sq.R:48:3'): sq() returns object with alphabet attribute that contains existing letters for unt and atp options ── alphabet(sq(str_atp, alphabet = atp_alph)) (`actual`) and `atp_alph` (`expected`) don't have the same values. * Only in `actual`: NA ── Failure ('test-sq.R:52:3'): sq() returns object with alphabet attribute that contains existing letters for unt and atp options ── alphabet(sq(str_unt, alphabet = "unt")) (`actual`) and obtain_alphabet(str_unt) (`expected`) don't have the same values. * Only in `actual`: NA * Only in `expected`: NA ── Failure ('test-sq.R:56:3'): sq() returns object with alphabet attribute that contains existing letters for unt and atp options ── alphabet(sq(str_unt, alphabet = "unt", NA_letter = "?")) (`actual`) and obtain_alphabet(str_unt, NA_letter = "?") (`expected`) don't have the same values. * Only in `actual`: NA * Only in `expected`: NA ── Failure ('test-sq.R:60:3'): sq() returns object with alphabet attribute that contains existing letters for unt and atp options ── alphabet(sq(str_unt, alphabet = "unt", NA_letter = "(?)")) (`actual`) and obtain_alphabet(str_unt, NA_letter = "(?)") (`expected`) don't have the same values. * Only in `actual`: NA * Only in `expected`: NA ── Failure ('test-substitute_letters.R:23:3'): substitute_letters() returns an object with trimmed alphabet attribute ── alphabet(substitute_letters(sq_dna, c(T = "B"))) (`actual`) and c("A", "C", "G", "B", "-") (`expected`) don't have the same values. * Only in `actual`: NA ── Failure ('test-substitute_letters.R:27:3'): substitute_letters() returns an object with trimmed alphabet attribute ── alphabet(...) (`actual`) and setdiff(...) (`expected`) don't have the same values. * Only in `actual`: NA [ FAIL 6 | WARN 0 | SKIP 1 | PASS 812 ] Error: Test failures Execution halted Flavor: r-devel-linux-x86_64-debian-clang

Version: 1.2.2
Check: tests
Result: ERROR Running ‘spelling.R’ [0s/0s] Running ‘testthat.R’ [9s/11s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(tidysq) Attaching package: 'tidysq' The following object is masked from 'package:base': paste > > test_check("tidysq") [ FAIL 6 | WARN 0 | SKIP 1 | PASS 812 ] ══ Skipped tests (1) ═══════════════════════════════════════════════════════════ • warning handling on C++ side is poorly implemented (1): 'test-warnings.R:39:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-sq.R:48:3'): sq() returns object with alphabet attribute that contains existing letters for unt and atp options ── alphabet(sq(str_atp, alphabet = atp_alph)) (`actual`) and `atp_alph` (`expected`) don't have the same values. * Only in `actual`: NA ── Failure ('test-sq.R:52:3'): sq() returns object with alphabet attribute that contains existing letters for unt and atp options ── alphabet(sq(str_unt, alphabet = "unt")) (`actual`) and obtain_alphabet(str_unt) (`expected`) don't have the same values. * Only in `actual`: NA * Only in `expected`: NA ── Failure ('test-sq.R:56:3'): sq() returns object with alphabet attribute that contains existing letters for unt and atp options ── alphabet(sq(str_unt, alphabet = "unt", NA_letter = "?")) (`actual`) and obtain_alphabet(str_unt, NA_letter = "?") (`expected`) don't have the same values. * Only in `actual`: NA * Only in `expected`: NA ── Failure ('test-sq.R:60:3'): sq() returns object with alphabet attribute that contains existing letters for unt and atp options ── alphabet(sq(str_unt, alphabet = "unt", NA_letter = "(?)")) (`actual`) and obtain_alphabet(str_unt, NA_letter = "(?)") (`expected`) don't have the same values. * Only in `actual`: NA * Only in `expected`: NA ── Failure ('test-substitute_letters.R:23:3'): substitute_letters() returns an object with trimmed alphabet attribute ── alphabet(substitute_letters(sq_dna, c(T = "B"))) (`actual`) and c("A", "C", "G", "B", "-") (`expected`) don't have the same values. * Only in `actual`: NA ── Failure ('test-substitute_letters.R:27:3'): substitute_letters() returns an object with trimmed alphabet attribute ── alphabet(...) (`actual`) and setdiff(...) (`expected`) don't have the same values. * Only in `actual`: NA [ FAIL 6 | WARN 0 | SKIP 1 | PASS 812 ] Error: Test failures Execution halted Flavor: r-devel-linux-x86_64-debian-gcc

Version: 1.2.2
Check: tests
Result: ERROR Running ‘spelling.R’ Running ‘testthat.R’ [19s/19s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(tidysq) Attaching package: 'tidysq' The following object is masked from 'package:base': paste > > test_check("tidysq") [ FAIL 6 | WARN 0 | SKIP 1 | PASS 812 ] ══ Skipped tests (1) ═══════════════════════════════════════════════════════════ • warning handling on C++ side is poorly implemented (1): 'test-warnings.R:39:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-sq.R:48:3'): sq() returns object with alphabet attribute that contains existing letters for unt and atp options ── alphabet(sq(str_atp, alphabet = atp_alph)) (`actual`) and `atp_alph` (`expected`) don't have the same values. * Only in `actual`: NA ── Failure ('test-sq.R:52:3'): sq() returns object with alphabet attribute that contains existing letters for unt and atp options ── alphabet(sq(str_unt, alphabet = "unt")) (`actual`) and obtain_alphabet(str_unt) (`expected`) don't have the same values. * Only in `actual`: NA * Only in `expected`: NA ── Failure ('test-sq.R:56:3'): sq() returns object with alphabet attribute that contains existing letters for unt and atp options ── alphabet(sq(str_unt, alphabet = "unt", NA_letter = "?")) (`actual`) and obtain_alphabet(str_unt, NA_letter = "?") (`expected`) don't have the same values. * Only in `actual`: NA * Only in `expected`: NA ── Failure ('test-sq.R:60:3'): sq() returns object with alphabet attribute that contains existing letters for unt and atp options ── alphabet(sq(str_unt, alphabet = "unt", NA_letter = "(?)")) (`actual`) and obtain_alphabet(str_unt, NA_letter = "(?)") (`expected`) don't have the same values. * Only in `actual`: NA * Only in `expected`: NA ── Failure ('test-substitute_letters.R:23:3'): substitute_letters() returns an object with trimmed alphabet attribute ── alphabet(substitute_letters(sq_dna, c(T = "B"))) (`actual`) and c("A", "C", "G", "B", "-") (`expected`) don't have the same values. * Only in `actual`: NA ── Failure ('test-substitute_letters.R:27:3'): substitute_letters() returns an object with trimmed alphabet attribute ── alphabet(...) (`actual`) and setdiff(...) (`expected`) don't have the same values. * Only in `actual`: NA [ FAIL 6 | WARN 0 | SKIP 1 | PASS 812 ] Error: Test failures Execution halted Flavor: r-devel-linux-x86_64-fedora-clang

Version: 1.2.2
Check: tests
Result: ERROR Running ‘spelling.R’ Running ‘testthat.R’ [12s/12s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(tidysq) Attaching package: 'tidysq' The following object is masked from 'package:base': paste > > test_check("tidysq") [ FAIL 6 | WARN 0 | SKIP 1 | PASS 812 ] ══ Skipped tests (1) ═══════════════════════════════════════════════════════════ • warning handling on C++ side is poorly implemented (1): 'test-warnings.R:39:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-sq.R:48:3'): sq() returns object with alphabet attribute that contains existing letters for unt and atp options ── alphabet(sq(str_atp, alphabet = atp_alph)) (`actual`) and `atp_alph` (`expected`) don't have the same values. * Only in `actual`: NA ── Failure ('test-sq.R:52:3'): sq() returns object with alphabet attribute that contains existing letters for unt and atp options ── alphabet(sq(str_unt, alphabet = "unt")) (`actual`) and obtain_alphabet(str_unt) (`expected`) don't have the same values. * Only in `actual`: NA * Only in `expected`: NA ── Failure ('test-sq.R:56:3'): sq() returns object with alphabet attribute that contains existing letters for unt and atp options ── alphabet(sq(str_unt, alphabet = "unt", NA_letter = "?")) (`actual`) and obtain_alphabet(str_unt, NA_letter = "?") (`expected`) don't have the same values. * Only in `actual`: NA * Only in `expected`: NA ── Failure ('test-sq.R:60:3'): sq() returns object with alphabet attribute that contains existing letters for unt and atp options ── alphabet(sq(str_unt, alphabet = "unt", NA_letter = "(?)")) (`actual`) and obtain_alphabet(str_unt, NA_letter = "(?)") (`expected`) don't have the same values. * Only in `actual`: NA * Only in `expected`: NA ── Failure ('test-substitute_letters.R:23:3'): substitute_letters() returns an object with trimmed alphabet attribute ── alphabet(substitute_letters(sq_dna, c(T = "B"))) (`actual`) and c("A", "C", "G", "B", "-") (`expected`) don't have the same values. * Only in `actual`: NA ── Failure ('test-substitute_letters.R:27:3'): substitute_letters() returns an object with trimmed alphabet attribute ── alphabet(...) (`actual`) and setdiff(...) (`expected`) don't have the same values. * Only in `actual`: NA [ FAIL 6 | WARN 0 | SKIP 1 | PASS 812 ] Error: Test failures Execution halted Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 1.2.2
Check: tests
Result: ERROR Running 'spelling.R' [0s] Running 'testthat.R' [12s] Running the tests in 'tests/testthat.R' failed. Complete output: > library(testthat) > library(tidysq) Attaching package: 'tidysq' The following object is masked from 'package:base': paste > > test_check("tidysq") [ FAIL 6 | WARN 0 | SKIP 1 | PASS 812 ] ══ Skipped tests (1) ═══════════════════════════════════════════════════════════ • warning handling on C++ side is poorly implemented (1): 'test-warnings.R:39:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-sq.R:48:3'): sq() returns object with alphabet attribute that contains existing letters for unt and atp options ── alphabet(sq(str_atp, alphabet = atp_alph)) (`actual`) and `atp_alph` (`expected`) don't have the same values. * Only in `actual`: NA ── Failure ('test-sq.R:52:3'): sq() returns object with alphabet attribute that contains existing letters for unt and atp options ── alphabet(sq(str_unt, alphabet = "unt")) (`actual`) and obtain_alphabet(str_unt) (`expected`) don't have the same values. * Only in `actual`: NA * Only in `expected`: NA ── Failure ('test-sq.R:56:3'): sq() returns object with alphabet attribute that contains existing letters for unt and atp options ── alphabet(sq(str_unt, alphabet = "unt", NA_letter = "?")) (`actual`) and obtain_alphabet(str_unt, NA_letter = "?") (`expected`) don't have the same values. * Only in `actual`: NA * Only in `expected`: NA ── Failure ('test-sq.R:60:3'): sq() returns object with alphabet attribute that contains existing letters for unt and atp options ── alphabet(sq(str_unt, alphabet = "unt", NA_letter = "(?)")) (`actual`) and obtain_alphabet(str_unt, NA_letter = "(?)") (`expected`) don't have the same values. * Only in `actual`: NA * Only in `expected`: NA ── Failure ('test-substitute_letters.R:23:3'): substitute_letters() returns an object with trimmed alphabet attribute ── alphabet(substitute_letters(sq_dna, c(T = "B"))) (`actual`) and c("A", "C", "G", "B", "-") (`expected`) don't have the same values. * Only in `actual`: NA ── Failure ('test-substitute_letters.R:27:3'): substitute_letters() returns an object with trimmed alphabet attribute ── alphabet(...) (`actual`) and setdiff(...) (`expected`) don't have the same values. * Only in `actual`: NA [ FAIL 6 | WARN 0 | SKIP 1 | PASS 812 ] Error: Test failures Execution halted Flavors: r-devel-windows-x86_64, r-release-windows-x86_64

Version: 1.2.2
Check: tests
Result: ERROR Running ‘spelling.R’ [0s/0s] Running ‘testthat.R’ [14s/16s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(tidysq) Attaching package: 'tidysq' The following object is masked from 'package:base': paste > > test_check("tidysq") [ FAIL 6 | WARN 0 | SKIP 1 | PASS 812 ] ══ Skipped tests (1) ═══════════════════════════════════════════════════════════ • warning handling on C++ side is poorly implemented (1): 'test-warnings.R:39:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-sq.R:48:3'): sq() returns object with alphabet attribute that contains existing letters for unt and atp options ── alphabet(sq(str_atp, alphabet = atp_alph)) (`actual`) and `atp_alph` (`expected`) don't have the same values. * Only in `actual`: NA ── Failure ('test-sq.R:52:3'): sq() returns object with alphabet attribute that contains existing letters for unt and atp options ── alphabet(sq(str_unt, alphabet = "unt")) (`actual`) and obtain_alphabet(str_unt) (`expected`) don't have the same values. * Only in `actual`: NA * Only in `expected`: NA ── Failure ('test-sq.R:56:3'): sq() returns object with alphabet attribute that contains existing letters for unt and atp options ── alphabet(sq(str_unt, alphabet = "unt", NA_letter = "?")) (`actual`) and obtain_alphabet(str_unt, NA_letter = "?") (`expected`) don't have the same values. * Only in `actual`: NA * Only in `expected`: NA ── Failure ('test-sq.R:60:3'): sq() returns object with alphabet attribute that contains existing letters for unt and atp options ── alphabet(sq(str_unt, alphabet = "unt", NA_letter = "(?)")) (`actual`) and obtain_alphabet(str_unt, NA_letter = "(?)") (`expected`) don't have the same values. * Only in `actual`: NA * Only in `expected`: NA ── Failure ('test-substitute_letters.R:23:3'): substitute_letters() returns an object with trimmed alphabet attribute ── alphabet(substitute_letters(sq_dna, c(T = "B"))) (`actual`) and c("A", "C", "G", "B", "-") (`expected`) don't have the same values. * Only in `actual`: NA ── Failure ('test-substitute_letters.R:27:3'): substitute_letters() returns an object with trimmed alphabet attribute ── alphabet(...) (`actual`) and setdiff(...) (`expected`) don't have the same values. * Only in `actual`: NA [ FAIL 6 | WARN 0 | SKIP 1 | PASS 812 ] Error: Test failures Execution halted Flavor: r-patched-linux-x86_64

Version: 1.2.2
Check: tests
Result: ERROR Running ‘spelling.R’ [0s/1s] Running ‘testthat.R’ [13s/16s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(tidysq) Attaching package: 'tidysq' The following object is masked from 'package:base': paste > > test_check("tidysq") [ FAIL 6 | WARN 0 | SKIP 1 | PASS 812 ] ══ Skipped tests (1) ═══════════════════════════════════════════════════════════ • warning handling on C++ side is poorly implemented (1): 'test-warnings.R:39:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-sq.R:48:3'): sq() returns object with alphabet attribute that contains existing letters for unt and atp options ── alphabet(sq(str_atp, alphabet = atp_alph)) (`actual`) and `atp_alph` (`expected`) don't have the same values. * Only in `actual`: NA ── Failure ('test-sq.R:52:3'): sq() returns object with alphabet attribute that contains existing letters for unt and atp options ── alphabet(sq(str_unt, alphabet = "unt")) (`actual`) and obtain_alphabet(str_unt) (`expected`) don't have the same values. * Only in `actual`: NA * Only in `expected`: NA ── Failure ('test-sq.R:56:3'): sq() returns object with alphabet attribute that contains existing letters for unt and atp options ── alphabet(sq(str_unt, alphabet = "unt", NA_letter = "?")) (`actual`) and obtain_alphabet(str_unt, NA_letter = "?") (`expected`) don't have the same values. * Only in `actual`: NA * Only in `expected`: NA ── Failure ('test-sq.R:60:3'): sq() returns object with alphabet attribute that contains existing letters for unt and atp options ── alphabet(sq(str_unt, alphabet = "unt", NA_letter = "(?)")) (`actual`) and obtain_alphabet(str_unt, NA_letter = "(?)") (`expected`) don't have the same values. * Only in `actual`: NA * Only in `expected`: NA ── Failure ('test-substitute_letters.R:23:3'): substitute_letters() returns an object with trimmed alphabet attribute ── alphabet(substitute_letters(sq_dna, c(T = "B"))) (`actual`) and c("A", "C", "G", "B", "-") (`expected`) don't have the same values. * Only in `actual`: NA ── Failure ('test-substitute_letters.R:27:3'): substitute_letters() returns an object with trimmed alphabet attribute ── alphabet(...) (`actual`) and setdiff(...) (`expected`) don't have the same values. * Only in `actual`: NA [ FAIL 6 | WARN 0 | SKIP 1 | PASS 812 ] Error: Test failures Execution halted Flavor: r-release-linux-x86_64

Version: 1.2.2
Check: installed package size
Result: NOTE installed size is 46.4Mb sub-directories of 1Mb or more: libs 45.5Mb Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Version: 1.2.2
Check: tests
Result: ERROR Running 'spelling.R' [0s] Running 'testthat.R' [17s] Running the tests in 'tests/testthat.R' failed. Complete output: > library(testthat) > library(tidysq) Attaching package: 'tidysq' The following object is masked from 'package:base': paste > > test_check("tidysq") [ FAIL 6 | WARN 0 | SKIP 1 | PASS 812 ] ══ Skipped tests (1) ═══════════════════════════════════════════════════════════ • warning handling on C++ side is poorly implemented (1): 'test-warnings.R:39:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-sq.R:48:3'): sq() returns object with alphabet attribute that contains existing letters for unt and atp options ── alphabet(sq(str_atp, alphabet = atp_alph)) (`actual`) and `atp_alph` (`expected`) don't have the same values. * Only in `actual`: NA ── Failure ('test-sq.R:52:3'): sq() returns object with alphabet attribute that contains existing letters for unt and atp options ── alphabet(sq(str_unt, alphabet = "unt")) (`actual`) and obtain_alphabet(str_unt) (`expected`) don't have the same values. * Only in `actual`: NA * Only in `expected`: NA ── Failure ('test-sq.R:56:3'): sq() returns object with alphabet attribute that contains existing letters for unt and atp options ── alphabet(sq(str_unt, alphabet = "unt", NA_letter = "?")) (`actual`) and obtain_alphabet(str_unt, NA_letter = "?") (`expected`) don't have the same values. * Only in `actual`: NA * Only in `expected`: NA ── Failure ('test-sq.R:60:3'): sq() returns object with alphabet attribute that contains existing letters for unt and atp options ── alphabet(sq(str_unt, alphabet = "unt", NA_letter = "(?)")) (`actual`) and obtain_alphabet(str_unt, NA_letter = "(?)") (`expected`) don't have the same values. * Only in `actual`: NA * Only in `expected`: NA ── Failure ('test-substitute_letters.R:23:3'): substitute_letters() returns an object with trimmed alphabet attribute ── alphabet(substitute_letters(sq_dna, c(T = "B"))) (`actual`) and c("A", "C", "G", "B", "-") (`expected`) don't have the same values. * Only in `actual`: NA ── Failure ('test-substitute_letters.R:27:3'): substitute_letters() returns an object with trimmed alphabet attribute ── alphabet(...) (`actual`) and setdiff(...) (`expected`) don't have the same values. * Only in `actual`: NA [ FAIL 6 | WARN 0 | SKIP 1 | PASS 812 ] Error: Test failures Execution halted Flavor: r-oldrel-windows-x86_64