Implements the Phylogeny-Guided Microbiome OTU-Specific Association Test method, which boosts the testing power by adaptively borrowing information from phylogenetically close OTUs (operational taxonomic units) of the target OTU. This method is built on a kernel machine regression framework and allows for flexible modeling of complex microbiome effects, adjustments for covariates, and can accommodate both continuous and binary outcomes.
Version: | 1.4 |
Depends: | methods |
Imports: | CompQuadForm, ape |
Suggests: | multtest, rmarkdown, knitr |
Published: | 2024-04-17 |
DOI: | 10.32614/CRAN.package.POSTm |
Author: | Caizhi Huang [aut], Jung-Ying Tzeng [aut], Shannon T. Holloway [aut, cre] |
Maintainer: | Shannon T. Holloway <shannon.t.holloway at gmail.com> |
License: | GPL-2 |
NeedsCompilation: | no |
Materials: | NEWS |
CRAN checks: | POSTm results |
Reference manual: | POSTm.pdf |
Vignettes: |
POSTm: $\text{\underline{P} |
Package source: | POSTm_1.4.tar.gz |
Windows binaries: | r-devel: POSTm_1.4.zip, r-release: POSTm_1.4.zip, r-oldrel: POSTm_1.4.zip |
macOS binaries: | r-release (arm64): POSTm_1.4.tgz, r-oldrel (arm64): POSTm_1.4.tgz, r-release (x86_64): POSTm_1.4.tgz, r-oldrel (x86_64): POSTm_1.4.tgz |
Old sources: | POSTm archive |
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