acoRn: Exclusion-Based Parentage Assignment Using Multilocus Genotype Data

Exclusion-based parentage assignment is essential for studies in biodiversity conservation and breeding programs - Kang Huang, Rui Mi, Derek W Dunn, Tongcheng Wang, Baoguo Li, (2018), <doi:10.1534/genetics.118.301592>. The tool compares multilocus genotype data of potential parents and offspring, identifying likely parentage relationships while accounting for genotyping errors, missing data, and duplicate genotypes. 'acoRn' includes two algorithms: one generates synthetic genotype data based on user-defined parameters, while the other analyzes existing genotype data to identify parentage patterns. The package is versatile, applicable to diverse organisms, and offers clear visual outputs, making it a valuable resource for researchers.

Version: 0.1.0
Depends: R (≥ 2.10)
Imports: data.table, stringr, stringi
Suggests: testthat (≥ 3.0.0)
Published: 2024-10-02
DOI: 10.32614/CRAN.package.acoRn
Author: Nikos Pechlivanis ORCID iD [aut, cre], Fotis Psomopoulos ORCID iD [aut], Aristotelis Papageorgiou ORCID iD [aut]
Maintainer: Nikos Pechlivanis <npechlv at gmail.com>
License: MIT + file LICENSE
NeedsCompilation: no
Materials: README
CRAN checks: acoRn results

Documentation:

Reference manual: acoRn.pdf

Downloads:

Package source: acoRn_0.1.0.tar.gz
Windows binaries: r-devel: acoRn_0.1.0.zip, r-release: acoRn_0.1.0.zip, r-oldrel: acoRn_0.1.0.zip
macOS binaries: r-release (arm64): acoRn_0.1.0.tgz, r-oldrel (arm64): acoRn_0.1.0.tgz, r-release (x86_64): acoRn_0.1.0.tgz, r-oldrel (x86_64): acoRn_0.1.0.tgz

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