finalfit 1.08
- ff_expand() approach for model simulation added.
- bug fix (tidyselect complaint on checks) #93
- or_plot() and coefficient_plot() now allowing confidence interval
specification via
confint_level
#58
- Remove requirement for ff_label() to convert input to
dataframe.
finalfit 1.072
- Remove requirement for ff_label() to convert input to
dataframe.
finalfit 1.071
- bug fix (tidyselect complaint on checks) #93
- or_plot() and coefficient_plot() now allowing confidence interval
specification via
confint_level
#58
finalfit 1.0.7
- bug fixes
- fit2df.lmerMod() set default
confint_sep = " to "
.
- boot_predict() and boot_compare() confidence interval limits and
methods options added.
finalfit 1.0.61
- bug fixes
- fit2df.lmerMod() set default
confint_sep = " to "
.
- boot_predict() and boot_compare() confidence interval limits and
methods options added.
finalfit 1.0.6
- new plots example vignette
https://finalfit.org/articles/all_plots_examples.html
- bug fix for
cont_cut
argument in
finalfit()
. #78
- bug fix for column totals with weighted data.
- correction to weighting of continuous explanatory variables in
summary_factorlist()
.
- fix bug to
coefficient_plot()
when passing
lmmixed()
object.
- weighting now available directly in
finalfit()
.
- formula parsed correctly in
lmuni()
,
lmmulti()
, glmuni()
, glmmulti()
,
coxphuni()
, coxphmulti().
finalfit 1.0.55
- bug fix for
cont_cut
argument in
finalfit()
. #78
finalfit 1.0.54
- bug fix for column totals with weighted data.
finalfit 1.0.53
- correction to weighting of continuous explanatory variables in
summary_factorlist()
.
- fix bug to
coefficient_plot()
when passing
lmmixed()
object.
finalfit 1.0.52
- weighting now available directly in
finalfit()
.
- formula parsed correctly in
lmuni()
,
lmmulti()
, glmuni()
, glmmulti()
,
coxphuni()
, coxphmulti().
finalfit 1.0.5
- formula interface added to
finalfit()
and
summary_factorlist()
.
- weights argument added to
summary_factorlist()
for
weighted tables.
finalfit()
updated and arguments to underlying models
can now be passed directly.
finalfit 1.0.4
missing_plot()
bugs fixed, many thanks @nathansam. #72
finalfit()
for CPH models now provides column
proportions by default, many thanks corneliushennch. #74
summary_factorlist_stratified()
: beta testing for
stratified tables.
rm_empty_block()
added: remove rows where all specified
variables are missing.
finalfit 1.0.3
add_row_total
in summary_factorlist()
now
can include proportion of complete data via
include_row_totals_percent
argument.
- Robust standard error approach added to vignette.
- Support added for weights etc. to be included in
coxphmulti()
.
- “Univariable” mixed effects models including random effects added to
vignette.
summary_factorlist()
: non-parametric continuous
variables now defaults to Q1 - Q3 rather than single figure IQR.
ff_interaction()
: default factor separator changed from
“|” to “_” and variable separator from “__” to “_” given
incompatibilities with packages such as brms
.
- Bug to
coefficient_plot()
fixed to bring back point
estimates.
na_to_prop = FALSE
in summary_factorlist()
to not include missing data in column proportions of categorical
data.
finalfit 1.0.2
ff_relabel_df()
added to allow passing data frame /
tibble with labels directly at bottom of pipe.
finalfit 1.0.1
ff_relabel()
tightened to allow mismatch between
available data and labels.
missing_compare()
code updated to allow arguments to be
passed to new summary_factorlist()
.
- Quadratic terms (
I(var1^2)
etc.) are now better
supported in finalfit()
.
cluster()
, frailty()
and
strata()
terms shown in finalfit()
regression
tables as an indicator they have been included in model.
or_plot()
remove_ref bug fix.
ff_newdata()
bug fix.
- Minor changes to accommodate dplyr 1.0.0.
- Plots bug fix when using
remove_ref
argument.
finalfit 1.0.0
- First official release.
- Re-write of major functions to remove older dependencies, improve
performance and add functionality.
summary_factorlist()
completely rewritten. New column
and row summary functions. Alternative statistical tests included. Finer
control over continuous variable behaviours.
finalfit 0.9.6
- Built on R 3.6.1.
- Better support for multiple imputation.
fit2df()
function for mipo
objects. See missing data
vignette/article for examples.
- Easier now to build on a
finalfit()
table by including
keep_fit_id = TRUE
. See ff_merge()
documentation for details.
- Issues with update of
tidyr::spread()
in
summary_factorlist()
so updated to
tidyr::pivot_wider()
.
ff_column_totals()
added to be used in combination with
summary_factorlist()
.
ff_row_totals()
added to be used in combination with
summary_factorlist()
.
ff_percent_only()
added to be used in combination with
summary_factorlist()
. #25
ff_remove_p()
can be applied to any condensed finalfit
output to remove the p-value. #26
finalfit()
now takes column = FALSE
to
provide row proportions. #26
check_recode()
added.
remove_labels()
now works for tibbles. #28
summary_factorlist()
includes argument
cont_range = TRUE
to include quartiles Q1 and Q3 when
median for continuous variables. #29
finalfit 0.9.5
data(wcgs)
added.
summary_factorlist()
geometric sd added.
- AIC added to lm metrics.
ff_label()
now does not add class “labelled”.
- Removed capacity for
glmmulti()
and
lmmulti()
to run multiple models from multiple dependent
variables. It wasn’t used and the list generated was inconvenient for
passing output to other functions such as
ggfortify::autoplot()
.
ff_permute()
re-written to allow many more options for
producing intermediate models.
finalfit 0.9.4
coxphuni()
and coxphmulti()
now take the
other library(survival)
functions
survival::strata()
and
survival::cluster()
.
- Fixed
hr_plot()
axis title edit option.
- Add option to remove reference level
(
remove_ref = TRUE
) to or_plot()
,
hr_plot()
and coefficient_plot()
.
summary_factorlist()
digit rounding option added.
summary_factorlist()
geometric mean option added.
- Level label removed for continuous variables from
or_plot()
, hr_plot()
and
coeffient_plot()
.
finalfit 0.9.3
- Bug in
or_plot()
and hr_plot()
introduced
in 0.9.2 because of new total column specification.
finalfit 0.9.2
- Competing risks time-to-event regression now supported via
cmprsk::crr()
: crruni()
,
crrmulti()
and fit2df()
.
- Complex stratified sampling now supported via
library(survey)
: svyglmuni()
,
svyglmmulti()
provide support for. #13
summary_factorlist()
total column now summarises
continuous variables. #17 #21
summary_factorlist()
can now take any
Hmisc:::summary.formula
argument, such as
catTest = catTestfisher
.
catTestfisher()
added.
finalfit_permute()
added.
finalfit 0.9.1
glmuni()
, glmmulti()
,
lmuni()
, lmmulti()
now all take
weights
and any other glm()
or
lm()
argument. #13
summary_factorlist()
rework. Now supports any number of
factor levels in dependent. #14 #15
summary_factorlist()
now provides total count for
continuous variable. #17
finalfit 0.9.0
or_plot()
bug fix
ff_remove_ref()
added. #12
glmmixed()
and lmmixed()
now support
random gradient models, and all complex lme4
specifications.
- Data preparation vignette added.
finalfit 0.8.9
ff_plot()
added
coefficient_plot()
added
variable_type()
added
- Compatibility for future
shinyfit
started.
ff_relabel()
added.
- Error added to
finalfit()
for not-allowed colons (:) in
factor levels. #10
finalfit 0.8.8
ff_glimpse()
re-written to remove psych
dependency
missing_glimpse()
added: single data frame describing
all variables and missing values
ff_interaction()
added: create variable for an
interaction between two factors
ff_label()
added: easily add label to variable in
dataframe
ff_newdata()
modified to take dataframe without
requirement for dependent and explanatory arguments
summary_factorlist()
modified to allow user to change
number of unique factor levels at which a variable a continuous variable
is converted to a factor (cont_cut
). #9
fit2df()
and its internal function
extract_fit
modified to take confint_type
and
confint_level
.
finalfit 0.8.7
- New vignettes
- pkgdown website support
missing_predictorMatrix()
added for use with
mice
finalfit 0.8.6
finalfit 0.8.5
- Extended missing data functions added
finalfit 0.8.4
- Bootstrap simulation functions added
finalfit 0.8.3
finalfit 0.8.2
- Missing data functions added
finalfit 0.8.1
Bug fixes
lmuni()
, lmmulti()
,
lmmixed()
, glmuni()
, glmmulti()
,
glmmixed()
, coxphuni()
,
coxphmulti()
New functions
metrics_hoslem()
is the first of a number of ‘metrics’
functions which will be introduced.
finalfit 0.7.8