Functions documentation and vignettes are available here.
Please note that function names changed in Version 0.2.44. If you are
using flashier code from previous versions, please make the
following substitutions, and note that many parameter names have changed
as well:
| Old Name | New Name |
|---|---|
| as.ebnm.fn | flash_ebnm |
| conv.crit.elbo | flash_conv_crit_elbo_diff |
| conv.crit.factors | flash_conv_crit_max_chg_F |
| conv.crit.loadings | flash_conv_crit_max_chg_L |
| display.elbo | flash_verbose_elbo |
| display.elbo.diff | flash_verbose_elbo_diff |
| display.F.max.chg | flash_verbose_max_chg_F |
| display.L.max.chg | flash_verbose_max_chg_L |
| display.max.chg | flash_verbose_max_chg |
| ff.elbo | flash_fit_get_elbo |
| ff.est.tau | flash_fit_get_est_tau |
| ff.fixed.tau | flash_fit_get_fixed_tau |
| ff.g | flash_fit_get_g |
| ff.KL | flash_fit_get_KL |
| ff.p2m | flash_fit_get_p2m |
| ff.pm | flash_fit_get_pm |
| ff.tau | flash_fit_get_tau |
| flash.add.greedy | flash_greedy |
| flash.backfit | flash_backfit |
| flash.fit | flash_fit |
| flash.fix.factors | flash_factors_fix |
| flash.init | flash_init |
| flash.init.factors | flash_factors_init |
| flash.nullcheck | flash_nullcheck |
| flash.remove.factors | flash_factors_remove |
| flash.reorder.factors | flash_factors_reorder |
| flash.set.factors.to.zero | flash_factors_set_to_zero |
| flash.set.verbose | flash_set_verbose |
| init.fn.default | flash_greedy_init_default |
| init.fn.irlba | flash_greedy_init_irlba |
| init.fn.softImpute | flash_greedy_init_softImpute |