Quantifies and removes technical noise from high-throughput
sequencing data. Two approaches are used, one based on the count
matrix, and one using the alignment BAM files directly.
Contains several options for every step of the process, as well
as tools to quality check and assess the stability of output.
| Version: |
1.0.0 |
| Depends: |
R (≥ 3.1.2) |
| Imports: |
utils, grDevices, tibble, dplyr, magrittr, ggplot2, preprocessCore, IRanges, GenomicRanges, Rsamtools, philentropy, doParallel, foreach |
| Suggests: |
testthat, roxygen2, knitr, rmarkdown |
| Published: |
2021-04-16 |
| DOI: |
10.32614/CRAN.package.noisyr |
| Author: |
Ilias Moutsopoulos [aut, cre],
Irina Mohorianu [aut, ctb],
Hajk-Georg Drost [ctb],
Elze Lauzikaite [ctb] |
| Maintainer: |
Ilias Moutsopoulos <im383 at cam.ac.uk> |
| BugReports: |
https://github.com/Core-Bioinformatics/noisyR/issues |
| License: |
GPL-2 |
| URL: |
https://github.com/Core-Bioinformatics/noisyR |
| NeedsCompilation: |
no |
| Materials: |
README |
| CRAN checks: |
noisyr results |