paleoDiv 0.4.0
- added three additional functions of general utility: violins() is a
wrapper around viol() facilitating its use for general-purpose violin
plots, jitterp() plots a simple jitter plot, and multijitter() is a
wrapper around jitterp() analogous to violins() around viol(). These
offer an advantage over ggplot2:geom_violin() and ggplot2::geom_jitter()
when integration with base R graphics is needed or desired.
paleoDiv 0.3.5
- changed handling of plot limits by phylo.spindles() to make use of
the full available plotting space of the active device for the
horizontal extent of plotted spindles
paleoDiv 0.3.4
- added parameters for setting the country/continent and environment
type when downloading pdb data
paleoDiv 0.3.3
- added ylimits parameter to phylo.spindles() to specify vertical plot
size is no phylogeny is plotted
paleoDiv 0.3.2
- patched label placement issue in phylo.spindles() when
txt.x==NULL
paleoDiv 0.3.1 (Release
date: 2024-05-03)
- patch for bug in tree.age.combine() (issue with underscores in taxon
names, now automatically removed)
paleoDiv 0.3.0 (Release
date: 2024-05-02)
- added two new functions, tree.ages.spp() and tree.age.combine() to
facilitate building matrices for time calibration of phylogenies
paleoDiv 0.2.6 (Release
date: 2024-04-05)
- improved automatic dimension settings for ts.periods() and
ts.stages()
paleoDiv 0.2.5 (Release
date: 2024-03-24)
- added parameter ‘italicize’ to phylo.spindles, allowing automatic
italicization of taxa given as indices or taxon names
- improved color vector handling by phylo.spindles (colour vectors
that are too short or long are now cycled or abridged
automatically)
paleoDiv 0.2.4 (Release
date: 2024-03-23)
- added better customizability for phylo.spindles Two new parameters
for controlling y locations for plotting and text x alignment
- standard value 0 for pos parameter of viol
- fixed bug in setting of cutoff values if no ages are provided
- fixed abdistr_() function; previous version erraneously failed to
take into account the ab.val data in the calculation of abundance
because of a forgotten # sign
- improved handling of spindle limits in phylo.spindles (cutoff
variable) if no age data are provided
# paleoDiv 0.2.3
(Release date: 2024-03-08)
# paleoDiv 0.2.2
(Release date: 2024-03-07)
- Fixed behaviour when paleobioDB is unavailable; all datasets for
examples and vignette are now included in package data, so this code
should run error-free even if website is unavailable.
# paleoDiv 0.2.1
(Release date: 2024-03-06)
- changed row numbering of output of synonymize()
# paleoDiv 0.2.0
(Release date: 2024-03-05)
- changed description and documentation
- fixed message output
- improved behavior of phylo.spindles; now allows plotting without any
phylogeny
# paleoDiv 0.1.1
(Release date: 2024-03-02)
- improvement to tree.ages() (if data is not found) and added option
for occ.cleanup() to return whole data.frame instead of mere
collumn
# paleoDiv v0.1.0
(Release date: 2024-03-01)
- Additional function synonymize() that helps with manual editing of
taxon-range tables to remove taxonomic errors
# paleoDiv v0.0.7
(Release date: 2024-03-01)
- Improved error-handling behaviour of pdb() function and others based
on it
# paleoDiv v0.0.6
(Release date: 2024-03-01)
- txt.y argument of phylo.spindles() now accepts vectorized input
# paleoDiv v0.0.5
(Release date: 2024-02-29)
- First version of this package