preseqR: Predicting Species Accumulation Curves

Originally as an R version of Preseq <doi:10.1038/nmeth.2375>, the package has extended its functionality to predict the r-species accumulation curve (r-SAC), which is the number of species represented at least r times as a function of the sampling effort. When r = 1, the curve is known as the species accumulation curve, or the library complexity curve in high-throughput genomic sequencing. The package includes both parametric and nonparametric methods, as described by Deng C, et al. (2018) <doi:10.48550/arXiv.1607.02804>.

Version:	4.0.0
Imports:	polynom, graphics, stats
Published:	2018-06-27
DOI:	10.32614/CRAN.package.preseqR
Author:	Chao Deng, Timothy Daley and Andrew D. Smith
Maintainer:	Chao Deng <chaodeng at usc.edu>
License:	GPL-3
NeedsCompilation:	no
Citation:	preseqR citation info
Materials:	README
CRAN checks:	preseqR results

Documentation:

Reference manual:

preseqR.pdf

Downloads:

Package source:	preseqR_4.0.0.tar.gz
Windows binaries:	r-devel: preseqR_4.0.0.zip, r-release: preseqR_4.0.0.zip, r-oldrel: preseqR_4.0.0.zip
macOS binaries:	r-release (arm64): preseqR_4.0.0.tgz, r-oldrel (arm64): preseqR_4.0.0.tgz, r-release (x86_64): preseqR_4.0.0.tgz, r-oldrel (x86_64): preseqR_4.0.0.tgz
Old sources:	preseqR archive

Reverse dependencies:

Reverse imports:

ATACseqQC, scRecover

Linking:

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