To cite package 'rehh' in publications use:

Gautier M, Vitalis R (2012). “rehh: An R package to detect footprints of selection in genome-wide SNP data from haplotype structure.” Bioinformatics, 28(8), 1176-1177.

Gautier M, Klassmann A, Vitalis R (2017). “rehh 2.0: a reimplementation of the R package rehh to detect positive selection from haplotype structure.” Molecular Ecology Resources, 17(1), 78-90. doi:10.1111/1755-0998.12634.

Klassmann A, Gautier M (2022). “Detecting selection using extended haplotype homozygosity (EHH)-based statistics in unphased or unpolarized data.” PLoS One, 17(1). doi:10.1371/journal.pone.0262024.

Corresponding BibTeX entries:

  @Article{,
    author = {Mathieu Gautier and Renaud Vitalis},
    title = {rehh: An R package to detect footprints of selection in
      genome-wide SNP data from haplotype structure},
    journal = {Bioinformatics},
    year = {2012},
    volume = {28},
    number = {8},
    pages = {1176-1177},
  }

  @Article{,
    author = {Mathieu Gautier and Alexander Klassmann and Renaud
      Vitalis},
    title = {rehh 2.0: a reimplementation of the R package rehh to
      detect positive selection from haplotype structure},
    journal = {Molecular Ecology Resources},
    year = {2017},
    volume = {17},
    number = {1},
    pages = {78-90},
    doi = {10.1111/1755-0998.12634},
  }

  @Article{,
    author = {Alexander Klassmann and Mathieu Gautier},
    title = {Detecting selection using extended haplotype homozygosity
      (EHH)-based statistics in unphased or unpolarized data},
    journal = {PLoS One},
    year = {2022},
    volume = {17},
    number = {1},
    doi = {10.1371/journal.pone.0262024},
  }