Last updated on 2024-05-03 05:53:39 CEST.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| qtl2ggplot | 1 | 6 | 6 |
| qtl2pattern | 1 | 11 | |
| qtlhot | 12 | ||
| qtlnet | 13 |
Current CRAN status: ERROR: 1, NOTE: 6, OK: 6
Version: 1.2.4
Check: installed package size
Result: NOTE
installed size is 5.5Mb
sub-directories of 1Mb or more:
doc 4.4Mb
Flavors: r-devel-windows-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 1.2.4
Check: examples
Result: ERROR
Running examples in 'qtl2ggplot-Ex.R' failed
The error most likely occurred in:
> ### Name: ggplot_genes
> ### Title: Plot gene locations for a genomic interval
> ### Aliases: ggplot_genes autoplot.genes
> ### Keywords: hgraphics
>
> ### ** Examples
>
> filename <- file.path("https://raw.githubusercontent.com/rqtl",
+ "qtl2data/master/DOex",
+ "c2_genes.rds")
> tmpfile <- tempfile()
> download.file(filename, tmpfile, quiet=TRUE)
Warning in download.file(filename, tmpfile, quiet = TRUE) :
URL 'https://raw.githubusercontent.com/rqtl/qtl2data/master/DOex/c2_genes.rds': status was 'SSL connect error'
Error in download.file(filename, tmpfile, quiet = TRUE) :
cannot open URL 'https://raw.githubusercontent.com/rqtl/qtl2data/master/DOex/c2_genes.rds'
Execution halted
Flavor: r-release-windows-x86_64
Version: 1.2.4
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building 'qtl2ggplot.Rmd' using rmarkdown
Quitting from lines at lines 30-36 [unnamed-chunk-2] (qtl2ggplot.Rmd)
Error: processing vignette 'qtl2ggplot.Rmd' failed with diagnostics:
cannot open URL 'https://raw.githubusercontent.com/rqtl/qtl2data/master/DOex/DOex.zip'
--- failed re-building 'qtl2ggplot.Rmd'
SUMMARY: processing the following file failed:
'qtl2ggplot.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-windows-x86_64
Current CRAN status: ERROR: 1, OK: 11
Version: 1.2.1
Check: examples
Result: ERROR
Running examples in 'qtl2pattern-Ex.R' failed
The error most likely occurred in:
> ### Name: gene_exon
> ### Title: Get exons for set of genes
> ### Aliases: gene_exon summary.gene_exon subset.gene_exon ggplot_gene_exon
> ### autoplot.gene_exon
> ### Keywords: hplot utilities
>
> ### ** Examples
>
> dirpath <- "https://raw.githubusercontent.com/rqtl/qtl2data/master/DOex"
>
> # Read DOex example cross from 'qtl2data'
> DOex <- subset(qtl2::read_cross2(file.path(dirpath, "DOex.zip")), chr = "2")
Warning in utils::download.file(file, tmpfile, quiet = TRUE) :
URL 'https://raw.githubusercontent.com/rqtl/qtl2data/master/DOex/DOex.zip': status was 'SSL connect error'
Error in utils::download.file(file, tmpfile, quiet = TRUE) :
cannot open URL 'https://raw.githubusercontent.com/rqtl/qtl2data/master/DOex/DOex.zip'
Calls: subset -> <Anonymous> -> <Anonymous>
Execution halted
Flavor: r-release-windows-x86_64
Version: 1.2.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building 'qtl2pattern.Rmd' using rmarkdown
Quitting from lines at lines 58-62 [unnamed-chunk-3] (qtl2pattern.Rmd)
Error: processing vignette 'qtl2pattern.Rmd' failed with diagnostics:
cannot open URL 'https://raw.githubusercontent.com/rqtl/qtl2data/master/DOex/DOex.zip'
--- failed re-building 'qtl2pattern.Rmd'
SUMMARY: processing the following file failed:
'qtl2pattern.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-windows-x86_64
Current CRAN status: OK: 12
Current CRAN status: OK: 13